RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1263632" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1263632 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3604489 3604489 PRJNA1263632_P_NODE_8563_length_233_cov_2.956250_g8545_i0 PRJNA1263632 8563 233 2.95625 6.8880625 Streptomyces 1883 Bacteria Bacteria 52.8 0.021   NTclustered gi|2070205667|gb|CP079114.1| 2855836 g8545 i0 100 0.240343347639485 28 0 12 0 84 111 3126113 3126086 Streptomyces sp. WY228 chromosome blastn 56 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WY228
18905476 18905476 PRJNA1263632_P_NODE_8355_length_241_cov_0.916667_g8337_i0 PRJNA1263632 8355 241 0.916667 2.20916747 Cutibacterium 1912216 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1446500593|gb|CP031442.1| 1747 g8337 i0 100 56.551867219917 241 0 100 0 1 241 1299535 1299295 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 13629 446 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;