RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1263632", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1263632 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18215369 18215369 PRJNA1263632_P_NODE_2035_length_426_cov_0.855524_g2017_i0 PRJNA1263632 2035 426 0.855524 3.64453224 root 1 Root_unresolved Root_unresolved 212 5.629999999999999e-66   NR MES1915178.1 1215613 g2017 i0 69.3 2.95070422535211 140 42 98.6 1 423 4 48 186 MES1915178.1 hypothetical protein [Cercozoa sp. M6MM] diamond 1257 214 0.990654205607477 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30231867 30231867 PRJNA1263632_P_NODE_6232_length_253_cov_13.255556_g6214_i0 PRJNA1263632 6232 253 13.255556 33.53655668 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 85.9 3.56e-20   NR MES1911722.1 1215613 g6214 i0 71.2 0.616600790513834 52 15 61.7 0 249 94 1 52 MES1911722.1 hypothetical protein [Cercozoa sp. M6MM] diamond 156 85.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31653953 31653953 PRJNA1263632_P_NODE_8657_length_210_cov_14.452555_g8639_i0 PRJNA1263632 8657 210 14.452555 30.3503655 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 95.5 3e-24   NR MES1911722.1 1215613 g8639 i0 80.8 0.742857142857143 52 10 74.3 0 193 38 1 52 MES1911722.1 hypothetical protein [Cercozoa sp. M6MM] diamond 156 95.5 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;