RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1263632" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1263632 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10567792 10567792 PRJNA1263632_P_NODE_3689_length_322_cov_2.208835_g3671_i0 PRJNA1263632 3689 322 2.208835 7.1124487 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 167 1.21e-45   NR WP_295614768.1 253161 g3671 i0 71 0.996894409937888 107 31 99.7 0 322 2 701 807 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 321 167 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
28526836 28526836 PRJNA1263632_P_NODE_7507_length_245_cov_1.790698_g7489_i0 PRJNA1263632 7507 245 1.790698 4.3872101 Methanobrevibacter sp. 66852 Archaea Archaea 70.9 3.99e-13   NR MEE3444538.1 66852 g7489 i0 40 3.39183673469388 80 48 98 0 5 244 3 82 MEE3444538.1 40S ribosomal protein S19 [Methanobrevibacter sp.] diamond 831 70.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30313433 30313433 PRJNA1263632_P_NODE_1892_length_440_cov_0.836512_g1874_i0 PRJNA1263632 1892 440 0.836512 3.6806528 root 1 Root_unresolved Root_unresolved 206 5.82e-59   NR WP_295614768.1 253161 g1874 i0 62.8 1.97727272727273 145 54 98.9 0 5 439 251 395 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 870 207 0.995169082125604 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
31496199 31496199 PRJNA1263632_P_NODE_2916_length_358_cov_1.621053_g2898_i0 PRJNA1263632 2916 358 1.621053 5.80336974 Methanobrevibacter sp. 66852 Archaea Archaea 78.6 2.25e-14   NR WP_292806969.1 66852 g2898 i0 38.7 0.99720670391061506 119 72 99.7 1 358 2 86 203 WP_292806969.1 WD40 repeat domain-containing protein [Methanobrevibacter sp.] diamond 357 78.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;