RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1262902", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1262902 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13807418 13807418 PRJNA1262902_P_NODE_12471_length_240_cov_2.502994_g12429_i0 PRJNA1262902 12471 240 2.502994 6.0071856 Campylobacter 194 Bacteria Bacteria 398 2.4099999999999996e-106   NTclustered gi|1207769205|gb|MF351718.1| 199 g12429 i0 100 209.745833333333 215 0 90 0 1 215 1495 1281 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 50339 398 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
26711605 26711605 PRJNA1262902_P_NODE_11541_length_242_cov_1.710059_g11499_i0 PRJNA1262902 11541 242 1.710059 4.13834278 Pseudomonadati 3379134 Bacteria Bacteria 57 7.53e-9   NR GAA9176257.1 210 g11499 i0 58 1.32644628099174 50 21 62 0 215 66 1 50 GAA9176257.1 hypothetical protein Kyoto193A_0400 [Helicobacter pylori] diamond 321 57 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28481336 28481336 PRJNA1262902_P_NODE_8066_length_250_cov_0.870056_g8024_i0 PRJNA1262902 8066 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 80.1 2.93e-17   NR WP_234446346.1 196 g8024 i0 71.2 48.324 66 19 79.2 0 2 199 14 79 WP_234446346.1 hypothetical protein, partial [Campylobacter fetus] diamond 12081 80.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus
28684702 28684702 PRJNA1262902_P_NODE_5947_length_266_cov_1.430052_g5905_i0 PRJNA1262902 5947 266 1.430052 3.80393832 Helicobacter muridarum 216 Bacteria Bacteria 43.1 0.0374   NR WP_104692215.1 216 g5905 i0 46.5 0.484962406015038 43 21 46.2 1 180 58 84 126 WP_104692215.1 alpha-2-macroglobulin family protein [Helicobacter muridarum] diamond 129 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter muridarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;