RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1262902" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA1262902 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8016929 8016929 PRJNA1262902_P_NODE_4587_length_284_cov_1.919431_g4545_i0 PRJNA1262902 4587 284 1.919431 5.45118404 Retrovirus rattus8197 3117313 Viruses Viruses 87.4 1.18e-17   NR DBA47493.1 3117313 g4545 i0 75 0.633802816901408 60 15 63.4 0 243 64 550 609 DBA47493.1 MAG TPA_asm: Env [Retrovirus rattus8197] diamond 180 87.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retrovirus rattus8197
27186371 27186371 PRJNA1262902_P_NODE_1382_length_395_cov_1.298137_g1340_i0 PRJNA1262902 1382 395 1.298137 5.12764115 Betaretrovirus 140052 Viruses Viruses 90.1 5.58e-18   NR NP_955564.1 11757 g1340 i0 45.2 6.65316455696203 73 40 55.4 0 295 77 755 827 NP_955564.1 p30DU-p13PR-RT-IN [Mouse mammary tumor virus] diamond 2628 90.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
30263774 30263774 PRJNA1262902_P_NODE_2712_length_325_cov_1.726190_g2670_i0 PRJNA1262902 2712 325 1.72619 5.6101175 Mouse mammary tumor virus 11757 Viruses Viruses 93.6 1.45e-19   NR NP_955564.1 11757 g2670 i0 43.8 3.87692307692308 105 59 96.9 0 325 11 630 734 NP_955564.1 p30DU-p13PR-RT-IN [Mouse mammary tumor virus] diamond 1260 93.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
32287213 32287213 PRJNA1262902_P_NODE_12679_length_226_cov_2.183007_g12637_i0 PRJNA1262902 12679 226 2.183007 4.93359582 Retrovirus rattus8197 3117313 Viruses Viruses 91.3 2.45e-19   NR DBA47493.1 3117313 g12637 i0 66.1 0.783185840707965 59 20 78.3 0 196 20 126 184 DBA47493.1 MAG TPA_asm: Env [Retrovirus rattus8197] diamond 177 91.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retrovirus rattus8197

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;