RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1262902", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

  • Bacillati · 5 ✖

bioproject 1

  • PRJNA1262902 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1054055 1054055 PRJNA1262902_P_NODE_481_length_599_cov_1.024715_g441_i0 PRJNA1262902 481 599 1.024715 6.13804285 Mesomycoplasma 2923352 Bacteria Bacteria 590 1.0199999999999999e-163   NTclustered gi|2713084492|gb|CP150431.1| 2100 g441 i0 99.689 18.245409015025 322 1 100 0 278 599 548232 547911 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 10929 590 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
2329294 2329294 PRJNA1262902_P_NODE_6642_length_258_cov_1.664865_g6600_i0 PRJNA1262902 6642 258 1.664865 4.2953517 Mesomycoplasma 2923352 Bacteria Bacteria 477 3.2699999999999985e-130   NTclustered gi|2713084492|gb|CP150431.1| 2100 g6600 i0 100 15 258 0 100 0 1 258 599114 599371 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 3870 477 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
6741311 6741311 PRJNA1262902_P_NODE_3146_length_314_cov_1.190871_g3104_i0 PRJNA1262902 3146 314 1.190871 3.73933494 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 52.8 0.029   NTclustered gi|2582039455|gb|CP134945.1| 29562 g3104 i0 100 0.178343949044586 28 0 9 0 283 310 571582 571555 Mesomycoplasma ovipneumoniae strain MoS5669_1L18I chromosome, complete genome blastn 56 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae
19489613 19489613 PRJNA1262902_P_NODE_8816_length_248_cov_0.880000_g8774_i0 PRJNA1262902 8816 248 0.88 2.1824 Mesomycoplasma lagogenitalium 171286 Bacteria Bacteria 54.7 0.006   NTclustered gi|2495165145|gb|CP122979.1| 171286 g8774 i0 100 0.116935483870968 29 0 12 0 77 105 3514 3486 Mesomycoplasma lagogenitalium strain 12MS chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma lagogenitalium
23315653 23315653 PRJNA1262902_P_NODE_10259_length_245_cov_0.895349_g10217_i0 PRJNA1262902 10259 245 0.895349 2.19360505 Mycoplasma cottewii 51364 Bacteria Bacteria 353 5.41e-93   NTclustered gi|2294785939|gb|CP103424.1| 51364 g10217 i0 96.698 84.930612244898 212 7 87 0 1 212 96562 96351 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 20808 353 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;