RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1262902", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1262902 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5466838 5466838 PRJNA1262902_P_NODE_2005_length_353_cov_1.100000_g1963_i0 PRJNA1262902 2005 353 1.1 3.883 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.003   NTclustered gi|687166746|emb|LN056604.1| 99802 g1963 i0 100 0.254957507082153 30 0 8 0 143 172 5120 5091 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0054939 blastn 90 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
7431941 7431941 PRJNA1262902_P_NODE_3466_length_306_cov_1.115880_g3424_i0 PRJNA1262902 3466 306 1.11588 3.4145928 Metazoa 33208 Platyhelminthes Platyhelminthes 566 8.239999999999998e-157   NTclustered gi|60687563|gb|AY914894.1| 6182 g3424 i0 100 100 306 0 100 0 1 306 232 537 Schistosoma japonicum unknown mRNA blastn 30600 566 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
30313432 30313432 PRJNA1262902_P_NODE_5472_length_272_cov_1.447236_g5430_i0 PRJNA1262902 5472 272 1.447236 3.93648192 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.1 1.01e-18   NR XP_009173853.1 6198 g5430 i0 48.9 1.93014705882353 88 45 97.1 0 5 268 175 262 XP_009173853.1 hypothetical protein T265_14865, partial [Opisthorchis viverrini] diamond 525 90.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;