RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1262902", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA1262902 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4190629 4190629 PRJNA1262902_P_NODE_4484_length_286_cov_1.258216_g4442_i0 PRJNA1262902 4484 286 1.258216 3.59849776 Mytilus californianus 6549 Mollusca Mollusca 54.7 0.007   NTclustered gi|2334792561|ref|XM_052216625.1| 6549 g4442 i0 100 0.101398601398601 29 0 10 0 140 168 3492 3520 PREDICTED: Mytilus californianus sodium-dependent serotonin transporter-like (LOC127710676), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
10567652 10567652 PRJNA1262902_P_NODE_5709_length_269_cov_1.464286_g5667_i0 PRJNA1262902 5709 269 1.464286 3.93892934 Mercenaria mercenaria 6596 Mollusca Mollusca 58.4 5.3e-4   NTclustered gi|2442011308|ref|XM_053525719.1| 6596 g5667 i0 97.059 0.12639405204461 34 1 13 0 157 190 11783 11816 PREDICTED: Mercenaria mercenaria multiple epidermal growth factor-like domains protein 8 (LOC123558913), mRNA blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
11842169 11842169 PRJNA1262902_P_NODE_11710_length_242_cov_0.911243_g11668_i0 PRJNA1262902 11710 242 0.911243 2.20520806 Saccostrea cuccullata 36930 Mollusca Mollusca 52.8 0.022   NTclustered gi|2669069085|ref|XM_062713603.1| 36930 g11668 i0 100 0.115702479338843 28 0 12 0 140 167 2889 2862 PREDICTED: Saccostrea cucullata vezatin-like (LOC134231618), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata
18905452 18905452 PRJNA1262902_P_NODE_3515_length_305_cov_1.043103_g3473_i0 PRJNA1262902 3515 305 1.043103 3.18146415 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.028   NTclustered gi|2502150340|ref|XM_056021085.1| 6526 g3473 i0 100 0.183606557377049 28 0 9 0 28 55 173 146 PREDICTED: Biomphalaria glabrata receptor-type guanylate cyclase Gyc76C-like (LOC106077443), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
27263638 27263638 PRJNA1262902_P_NODE_1103_length_429_cov_3.120787_g1061_i0 PRJNA1262902 1103 429 3.120787 13.38817623 Elysia chlorotica 188477 Mollusca Mollusca 49.3 2.98e-4   NR RUS74546.1 188477 g1061 i0 30.9 0.566433566433566 81 56 56.6 0 303 61 50 130 RUS74546.1 hypothetical protein EGW08_017694, partial [Elysia chlorotica] diamond 243 49.3 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Elysia Elysia chlorotica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;