RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1262902", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1262902 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26757236 26757236 PRJNA1262902_P_NODE_1161_length_422_cov_1.323782_g1119_i0 PRJNA1262902 1161 422 1.323782 5.58636004 Blyttiomyces helicus 388810 Fungi Fungi 79 5.97e-14   NR RKO86830.1 388810 g1119 i0 33.6 0.995260663507109 140 74 95.3 3 402 1 103 229 RKO86830.1 hypothetical protein BDK51DRAFT_45779 [Blyttiomyces helicus] diamond 420 79 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces helicus
26915669 26915669 PRJNA1262902_P_NODE_5762_length_268_cov_1.579487_g5720_i0 PRJNA1262902 5762 268 1.579487 4.23302516 Gaertneriomyces semiglobifer 109897 Fungi Fungi 65.5 3.58e-10   NR KAI8998442.1 109897 g5720 i0 36.4 0.985074626865672 88 56 98.5 0 266 3 187 274 KAI8998442.1 hypothetical protein BC832DRAFT_595042 [Gaertneriomyces semiglobifer] diamond 264 65.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
29726177 29726177 PRJNA1262902_P_NODE_3790_length_299_cov_1.022124_g3748_i0 PRJNA1262902 3790 299 1.022124 3.05615076 Fimicolochytrium jonesii 1396493 Fungi Fungi 62.8 6.84e-9   NR XP_052928538.1 1396493 g3748 i0 52.9 0.682274247491639 68 32 68.2 0 38 241 817 884 XP_052928538.1 uncharacterized protein EV422DRAFT_503636 [Fimicolochytrium jonesii] diamond 204 62.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;