RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1262902", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1262902 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4882013 4882013 PRJNA1262902_P_NODE_9904_length_246_cov_0.890173_g9862_i0 PRJNA1262902 9904 246 0.890173 2.18982558 FCB group 1783270 Bacteria Bacteria 52.8 0.022   NTclustered gi|2844596544|gb|CP172416.1| 29549 g9862 i0 96.875 0.386178861788618 32 0 13 1 50 80 2882913 2882882 Rhodothermus marinus strain ISCAR-493 chromosome blastn 95 52.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
18215244 18215244 PRJNA1262902_P_NODE_11475_length_243_cov_0.905882_g11433_i0 PRJNA1262902 11475 243 0.905882 2.20129326 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 107 5.86e-25   NR HLT46761.1 2838334 g11433 i0 72.5 0.987654320987654 80 22 98.8 0 242 3 190 269 HLT46761.1 right-handed parallel beta-helix repeat-containing protein [Rubricoccaceae bacterium] diamond 240 107 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
31956577 31956577 PRJNA1262902_P_NODE_12277_length_241_cov_0.916667_g12235_i0 PRJNA1262902 12277 241 0.916667 2.20916747 Rhodothermales 1853224 Bacteria Bacteria 95.1 7.44e-21   NR ARA91880.1 1779382 g12235 i0 60 1.94190871369295 80 32 99.6 0 2 241 53 132 ARA91880.1 endonuclease [Rhodothermaceae bacterium RA] diamond 468 95.5 0.995811518324607 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;