RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1262902" and tax_clade = "Discoba"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1262902 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4190622 4190622 PRJNA1262902_P_NODE_3764_length_299_cov_1.362832_g3722_i0 PRJNA1262902 3764 299 1.362832 4.07486768 Euglena gracilis 3039 Euglenozoa other_Eukaryota 95.3 4.55e-15   NTclustered gi|51987920|dbj|AB167380.1| 3039 g3722 i0 87.952 0.431438127090301 83 6 27 3 219 299 642 562 Euglena gracilis b-IP39 mRNA for beta-type IP39, complete cds blastn 129 95.3 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
30390275 30390275 PRJNA1262902_P_NODE_8233_length_249_cov_1.312500_g8191_i0 PRJNA1262902 8233 249 1.3125 3.268125 Euglena gracilis 3039 Euglenozoa other_Eukaryota 118 6.01e-32   NR QLA09609.1 3039 g8191 i0 82.4 0.819277108433735 68 12 81.9 0 245 42 85 152 QLA09609.1 60S large subunit ribosomal protein uL15 variant 2 [Euglena gracilis] diamond 204 118 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;