RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1255065" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1255065 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28747561 28747561 PRJNA1255065_P_NODE_138267_length_164_cov_0.904348_g136039_i0 PRJNA1255065 138267 164 0.904348 1.48313072 Nitrospira sp. 70125 Bacteria Bacteria 68.6 1.64e-13   NR MFO0705273.1 70125 g136039 i0 65.2 0.841463414634146 46 16 84.1 0 3 140 10 55 MFO0705273.1 hypothetical protein [Nitrospira sp.] diamond 138 68.6 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28986737 28986737 PRJNA1255065_P_NODE_152748_length_162_cov_0.920354_g150520_i0 PRJNA1255065 152748 162 0.920354 1.49097348 Nitrospira 1234 Bacteria Bacteria 106 3.77e-25   NR WP_143838597.1 96242 g150520 i0 96.2 5.88888888888889 53 2 98.1 0 161 3 457 509 WP_143838597.1 Lon protease family protein, partial [Nitrospira cf. moscoviensis SBR1015] diamond 954 106 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira cf. moscoviensis SBR1015
30010791 30010791 PRJNA1255065_P_NODE_55971_length_262_cov_0.976526_g53743_i0 PRJNA1255065 55971 262 0.976526 2.55849812 Candidatus Nitronereus thalassa 3020898 Bacteria Bacteria 43.5 0.0253   NR WP_313833734.1 3020898 g53743 i0 51.6 0.354961832061069 31 15 35.5 0 153 245 527 557 WP_313833734.1 hypothetical protein [Candidatus Nitronereus thalassa] diamond 93 43.5 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Candidatus Nitronereus Candidatus Nitronereus thalassa
31337665 31337665 PRJNA1255065_P_NODE_139556_length_164_cov_0.904348_g137328_i0 PRJNA1255065 139556 164 0.904348 1.48313072 Nitrospira sp. 70125 Bacteria Bacteria 124 1.4699999999999998e-35   NR TKB65094.1 70125 g137328 i0 100 1.97560975609756 54 0 98.8 0 164 3 13 66 TKB65094.1 MAG: hypothetical protein E8D52_18650, partial [Nitrospira sp.] diamond 324 124 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32350282 32350282 PRJNA1255065_P_NODE_133879_length_165_cov_0.896552_g131651_i0 PRJNA1255065 133879 165 0.896552 1.4793108 Nitrospira sp. 70125 Bacteria Bacteria 96.7 1.36e-21   NR NOU10305.1 70125 g131651 i0 75.9 0.981818181818182 54 13 98.2 0 162 1 479 532 NOU10305.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Nitrospira sp.] diamond 162 96.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32697365 32697365 PRJNA1255065_P_NODE_146500_length_163_cov_0.912281_g144272_i0 PRJNA1255065 146500 163 0.912281 1.48701803 Candidatus Nitrospira nitrosa 1742972 Bacteria Bacteria 109 4.660000000000001e-27   NR WP_090743850.1 1742972 g144272 i0 98.1 1.91411042944785 52 1 95.7 0 6 161 213 264 WP_090743850.1 glycosyltransferase family 4 protein [Candidatus Nitrospira nitrosa] diamond 312 109 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira nitrosa
32872669 32872669 PRJNA1255065_P_NODE_151640_length_162_cov_0.920354_g149412_i0 PRJNA1255065 151640 162 0.920354 1.49097348 Nitrospira 1234 Bacteria Bacteria 86.3 2.74e-18   NR HMS85978.1 70125 g149412 i0 89.1 11.0555555555556 46 5 85.2 0 156 19 302 347 HMS85978.1 NAD(P)-dependent alcohol dehydrogenase [Nitrospira sp.] diamond 1791 86.3 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;