RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1255065" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1255065 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5463985 5463985 PRJNA1255065_P_NODE_87645_length_189_cov_1.485714_g85417_i0 PRJNA1255065 87645 189 1.485714 2.80799946 Mermis nigrescens 70421 Nematoda Nematoda 111 2.64e-20   NTclustered gi|584293995|gb|KF886018.1| 70421 g85417 i0 85.217 51.4179894179894 115 10 59 6 1 112 229 119 Mermis nigrescens isolate M1812F 28S ribosomal RNA gene, partial sequence blastn 9718 111 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Mermithida Mermithidae Mermis Mermis nigrescens
22729765 22729765 PRJNA1255065_P_NODE_100098_length_174_cov_1.248000_g97870_i0 PRJNA1255065 100098 174 1.248 2.17152 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 206 1.0599999999999999e-48   NTclustered gi|1551594953|gb|MK379607.1| 554024 g97870 i0 88.202 99.2643678160919 178 14 100 6 1 174 2 176 Nematoda environmental sample voucher 356S small subunit ribosomal RNA gene, partial sequence blastn 17272 207 0.995169082125604 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
24586192 24586192 PRJNA1255065_P_NODE_118620_length_167_cov_0.881356_g116392_i0 PRJNA1255065 118620 167 0.881356 1.47186452 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.004   NTclustered gi|687022757|emb|LM525671.1| 174720 g116392 i0 100 0.173652694610778 29 0 17 0 131 159 49109 49081 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000048 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
27989907 27989907 PRJNA1255065_P_NODE_80485_length_200_cov_1.033113_g78257_i0 PRJNA1255065 80485 200 1.033113 2.066226 Necator americanus 51031 Nematoda Nematoda 42.4 0.0287   NR XP_064060758.1 51031 g78257 i0 36.4 0.825 55 34 82.5 1 7 171 175 228 XP_064060758.1 hypothetical protein RB195_014557 [Necator americanus] diamond 165 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
30073667 30073667 PRJNA1255065_P_NODE_125552_length_166_cov_0.888889_g123324_i0 PRJNA1255065 125552 166 0.888889 1.47555574 Trichuris suis 68888 Nematoda Nematoda 46.2 7.98e-4   NR KHJ42451.1 68888 g123324 i0 84 1.37349397590361 25 4 45.2 0 75 1 447 471 KHJ42451.1 reverse transcriptase [Trichuris suis] diamond 228 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;