contig_metadata
14 rows where bioproject = "PRJNA1255065" and tax_phylum = "Kitrinoviricota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 360354 | 360354 | PRJNA1255065_P_NODE_58081_length_254_cov_0.770732_g55853_i0 | PRJNA1255065 | 58081 | 254 | 0.770732 | 1.95765928 | Pestivirus bovis | 3052619 | Viruses | Viruses | 412 | 9.18e-111 | NTclustered | gi|1408941610|gb|MG950357.1| | 981676 | g55853 | i0 | 96.047 | 99.4370078740157 | 253 | 10 | 99 | 0 | 2 | 254 | 8294 | 8042 | Bovine viral diarrhea virus 1b isolate B1A polyprotein gene, partial cds | blastn | 25257 | 412 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1053060 | 1053060 | PRJNA1255065_P_NODE_115401_length_168_cov_0.873950_g113173_i0 | PRJNA1255065 | 115401 | 168 | 0.87395 | 1.468236 | Tobamovirus | 12234 | Viruses | Viruses | 311 | 2.11e-80 | NTclustered | gi|2837380181|gb|PP099897.1| | 1761477 | g113173 | i0 | 100 | 100 | 168 | 0 | 100 | 0 | 1 | 168 | 3065 | 3232 | Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome | blastn | 16800 | 311 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Virgaviridae | Tobamovirus | Tobamovirus fructirugosum | ||
| 2910695 | 2910695 | PRJNA1255065_P_NODE_130263_length_165_cov_0.896552_g128035_i0 | PRJNA1255065 | 130263 | 165 | 0.896552 | 1.4793108 | Pestivirus bovis | 3052619 | Viruses | Viruses | 252 | 1.27e-62 | NTclustered | gi|2289973227|gb|OP020143.1| | 3052619 | g128035 | i0 | 94.479 | 98.8484848484848 | 163 | 9 | 99 | 0 | 1 | 163 | 10363 | 10525 | MAG: Pestivirus A isolate BVDV1_NSWp0.3 polyprotein gene, complete cds | blastn | 16310 | 252 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4187644 | 4187644 | PRJNA1255065_P_NODE_72164_length_215_cov_0.957831_g69936_i0 | PRJNA1255065 | 72164 | 215 | 0.957831 | 2.05933665 | Pestivirus bovis | 3052619 | Viruses | Viruses | 379 | 7.659999999999998e-101 | NTclustered | gi|800924328|gb|KP941589.1| | 11099 | g69936 | i0 | 98.598 | 99.5395348837209 | 214 | 3 | 99 | 0 | 2 | 215 | 10750 | 10537 | Bovine viral diarrhea virus 1 strain USMARC-55923 polyprotein gene, complete cds | blastn | 21401 | 379 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6738440 | 6738440 | PRJNA1255065_P_NODE_85726_length_192_cov_1.055944_g83498_i0 | PRJNA1255065 | 85726 | 192 | 1.055944 | 2.02741248 | Pestivirus bovis | 3052619 | Viruses | Viruses | 322 | 1.14e-83 | NTclustered | gi|459284076|gb|JX297517.1| | 981676 | g83498 | i0 | 96.875 | 100 | 192 | 6 | 100 | 0 | 1 | 192 | 11202 | 11011 | Bovine viral diarrhea virus type 1b isolate Hercules polyprotein gene, complete cds | blastn | 19200 | 322 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8013750 | 8013750 | PRJNA1255065_P_NODE_34007_length_412_cov_1.123967_g31787_i0 | PRJNA1255065 | 34007 | 412 | 1.123967 | 4.63074404 | Pestivirus bovis | 3052619 | Viruses | Viruses | 725 | 0 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g31787 | i0 | 98.537 | 99.9854368932039 | 410 | 6 | 99 | 0 | 3 | 412 | 5514 | 5105 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 41194 | 725 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 9288918 | 9288918 | PRJNA1255065_P_NODE_94268_length_181_cov_0.787879_g92040_i0 | PRJNA1255065 | 94268 | 181 | 0.787879 | 1.42606099 | Pestivirus bovis | 3052619 | Viruses | Viruses | 291 | 2.9899999999999993e-74 | NTclustered | gi|2858850717|gb|PQ613792.1| | 11099 | g92040 | i0 | 95.58 | 99.4861878453039 | 181 | 8 | 100 | 0 | 1 | 181 | 3257 | 3077 | Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds | blastn | 18007 | 291 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13114591 | 13114591 | PRJNA1255065_P_NODE_92291_length_183_cov_1.365672_g90063_i0 | PRJNA1255065 | 92291 | 183 | 1.365672 | 2.49917976 | Pestivirus bovis | 3052619 | Viruses | Viruses | 289 | 1.0899999999999998e-73 | NTclustered | gi|1248821481|emb|LT907991.1| | 11099 | g90063 | i0 | 95.082 | 70.6174863387978 | 183 | 9 | 100 | 0 | 1 | 183 | 10616 | 10434 | Bovine viral diarrhea virus 1 isolate VE_138cp_05 genome assembly, complete genome: monopartite | blastn | 12923 | 289 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13806682 | 13806682 | PRJNA1255065_P_NODE_27951_length_487_cov_1.070776_g25752_i0 | PRJNA1255065 | 27951 | 487 | 1.070776 | 5.21467912 | Pestivirus | 11095 | Viruses | Viruses | 784 | 0 | NTclustered | gi|530291193|gb|KC963967.1| | 11099 | g25752 | i0 | 95.688 | 99.8829568788501 | 487 | 21 | 100 | 0 | 1 | 487 | 873 | 1359 | Bovine viral diarrhea virus 1 isolate 12F004, complete genome | blastn | 48643 | 784 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 16355641 | 16355641 | PRJNA1255065_P_NODE_31013_length_446_cov_1.403023_g28800_i0 | PRJNA1255065 | 31013 | 446 | 1.403023 | 6.25748258 | Pestivirus | 11095 | Viruses | Viruses | 754 | 0 | NTclustered | gi|800924334|gb|KP941592.1| | 11099 | g28800 | i0 | 97.309 | 94.8139013452915 | 446 | 9 | 100 | 3 | 1 | 446 | 456 | 14 | Bovine viral diarrhea virus 1 strain USMARC-55926 polyprotein gene, complete cds | blastn | 42287 | 758 | 0.994722955145119 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20761682 | 20761682 | PRJNA1255065_P_NODE_140377_length_164_cov_0.904348_g138149_i0 | PRJNA1255065 | 140377 | 164 | 0.904348 | 1.48313072 | Pestivirus tauri | 3052626 | Viruses | Viruses | 296 | 5.73e-76 | NTclustered | gi|998226330|gb|KT832820.1| | 54315 | g138149 | i0 | 99.387 | 99.3536585365854 | 163 | 1 | 99 | 0 | 1 | 163 | 11303 | 11465 | Bovine viral diarrhea virus 2 strain USMARC-60767, complete genome | blastn | 16294 | 296 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 22037006 | 22037006 | PRJNA1255065_P_NODE_36258_length_388_cov_0.908555_g34037_i0 | PRJNA1255065 | 36258 | 388 | 0.908555 | 3.5251934 | Pestivirus bovis | 3052619 | Viruses | Viruses | 645 | 1.3399999999999995e-180 | NTclustered | gi|2858850691|gb|PQ613779.1| | 11099 | g34037 | i0 | 96.649 | 100 | 388 | 13 | 100 | 0 | 1 | 388 | 7728 | 8115 | Bovine viral diarrhea virus 1 isolate USMARC/PI-86-21/Serum polyprotein gene, complete cds | blastn | 38800 | 645 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23311939 | 23311939 | PRJNA1255065_P_NODE_102179_length_172_cov_0.910569_g99951_i0 | PRJNA1255065 | 102179 | 172 | 0.910569 | 1.56617868 | Pestivirus bovis | 3052619 | Viruses | Viruses | 285 | 1.31e-72 | NTclustered | gi|1129879417|gb|KX170076.1| | 11099 | g99951 | i0 | 97.041 | 97.8953488372093 | 169 | 5 | 98 | 0 | 1 | 169 | 74 | 242 | Bovine viral diarrhea virus 1 isolate V078 E1 gene, partial cds | blastn | 16838 | 285 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 28873826 | 28873826 | PRJNA1255065_P_NODE_139928_length_164_cov_0.904348_g137700_i0 | PRJNA1255065 | 139928 | 164 | 0.904348 | 1.48313072 | Tolivirales sp. | 2809914 | Viruses | Viruses | 47 | 4.08e-4 | NR | WRQ65890.1 | 2809914 | g137700 | i0 | 44.4 | 2.01219512195122 | 54 | 29 | 97 | 1 | 6 | 164 | 167 | 220 | WRQ65890.1 polyprotein, partial [Tolivirales sp.] | diamond | 330 | 47 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Tolucaviricetes | Tolivirales | Tolivirales sp. |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;