RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1255065" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1255065 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32002048 32002048 PRJNA1255065_P_NODE_105198_length_169_cov_0.866667_g102970_i0 PRJNA1255065 105198 169 0.866667 1.46466723 Chitinivibrionia bacterium 2660710 Bacteria Bacteria 42.4 0.0185   NR MCL2844748.1 2660710 g102970 i0 35.2 0.958579881656805 54 34 94.1 1 6 164 311 364 MCL2844748.1 glycosyl hydrolase family 8 [Chitinivibrionia bacterium] diamond 162 42.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia       Chitinivibrionia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;