RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1255065" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1255065 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8013741 8013741 PRJNA1255065_P_NODE_31827_length_436_cov_7.351421_g29611_i0 PRJNA1255065 31827 436 7.351421 32.05219556 Ripella sp. PS2 1217116 Discosea other_Eukaryota 712 0   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g29611 i0 96.136 100.688073394495 440 9 100 4 1 436 1003 568 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 43900 712 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
8705774 8705774 PRJNA1255065_P_NODE_117007_length_167_cov_0.881356_g114779_i0 PRJNA1255065 117007 167 0.881356 1.47186452 Dermamoeba 242548 Discosea other_Eukaryota 132 1.7500000000000002e-26   NTclustered gi|33946341|gb|AY294148.1| 242549 g114779 i0 86.179 29.1676646706587 123 15 74 2 4 126 997 877 Dermamoeba algensis small subunit ribosomal RNA gene, partial sequence blastn 4871 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Dermamoeba Dermamoeba algensis
8705959 8705959 PRJNA1255065_P_NODE_155767_length_152_cov_5.291262_g153539_i0 PRJNA1255065 155767 152 5.291262 8.04271824 Ripella 1217112 Discosea other_Eukaryota 281 1.46e-71   NTclustered gi|1269228349|gb|MF683474.1| 2047821 g153539 i0 100 100.5 152 0 100 0 1 152 542 391 Ripella platypodia clone 23.4.22 18S ribosomal RNA gene, partial sequence blastn 15276 281 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
11839205 11839205 PRJNA1255065_P_NODE_78590_length_203_cov_1.337662_g76362_i0 PRJNA1255065 78590 203 1.337662 2.71545386 Paramoeba perurans 437603 Discosea other_Eukaryota 294 2.66e-75   NTclustered gi|145386781|gb|EF216906.1| 437603 g76362 i0 92.754 95.7931034482759 207 10 100 4 1 203 1418 1213 Neoparamoeba perurans strain GD-D1/1 28S large subunit ribosomal RNA gene, partial sequence blastn 19446 294 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
17631180 17631180 PRJNA1255065_P_NODE_73094_length_213_cov_1.158537_g70866_i0 PRJNA1255065 73094 213 1.158537 2.46768381 Vannella 95228 Discosea other_Eukaryota 300 6.06e-77   NTclustered gi|399764226|gb|JQ271737.1| 1215641 g70866 i0 94.388 92.9342723004695 196 9 92 2 1 195 1037 843 Vannella sp. ELH6 18S ribosomal RNA gene, partial sequence blastn 19795 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ELH6
20761572 20761572 PRJNA1255065_P_NODE_129077_length_165_cov_0.896552_g126849_i0 PRJNA1255065 129077 165 0.896552 1.4793108 Acanthamoeba healyi 65661 Discosea other_Eukaryota 75 2.94e-9   NTclustered gi|28194604|gb|AF479548.1| 65661 g126849 i0 88.525 0.36969696969697 61 7 37 0 30 90 292 232 Acanthamoeba healyi strain CDC V013 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 61 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
20762033 20762033 PRJNA1255065_P_NODE_65337_length_230_cov_2.801105_g63109_i0 PRJNA1255065 65337 230 2.801105 6.4425415 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 398 2.2899999999999997e-106   NTclustered gi|861553759|gb|KP719186.1| 1678066 g63109 i0 97.835 69.6739130434783 231 3 100 2 1 230 147 376 Korotnevella jeppesenii strain A4DVDPB clone 4 small subunit ribosomal RNA gene, partial sequence blastn 16025 398 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
21454850 21454850 PRJNA1255065_P_NODE_115817_length_167_cov_2.237288_g113589_i0 PRJNA1255065 115817 167 2.237288 3.73627096 Ripella 1217112 Discosea other_Eukaryota 291 2.7299999999999993e-74   NTclustered gi|1269228355|gb|MF683480.1| 2047821 g113589 i0 98.204 100.125748502994 167 1 99 2 2 167 1143 1308 Ripella platypodia clone 23.4.29 18S ribosomal RNA gene, partial sequence blastn 16721 291 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
21455417 21455417 PRJNA1255065_P_NODE_87677_length_189_cov_1.471429_g85449_i0 PRJNA1255065 87677 189 1.471429 2.78100081 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 94.7 8.549999999999999e-23   NR XP_004349731.1 1257118 g85449 i0 65.6 3.87301587301587 61 21 96.8 0 184 2 40 100 XP_004349731.1 ribosomal protein S13p/S18e, putative [Acanthamoeba castellanii str. Neff] diamond 732 94.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;