RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1255065" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1255065 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11838925 11838925 PRJNA1255065_P_NODE_43190_length_331_cov_1.471631_g40965_i0 PRJNA1255065 43190 331 1.471631 4.87109861 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 363 1.2699999999999999e-95   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g40965 i0 86.747 52.8006042296073 332 37 99 6 1 330 3668 3994 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 17477 363 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
17631146 17631146 PRJNA1255065_P_NODE_67354_length_225_cov_2.522727_g65126_i0 PRJNA1255065 67354 225 2.522727 5.67613575 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 1.93e-27   NTclustered gi|220983371|dbj|AB453007.1| 1561963 g65126 i0 78.017 60.9466666666667 232 40 100 10 1 225 1066 839 Amorphochlora amoebiformis gene for nuclear large subunit ribosomal RNA, partial sequence blastn 13713 135 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Amorphochlora Amorphochlora amoebiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;