RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1255065", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

  • Viridiplantae · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1255065 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1634546 1634546 PRJNA1255065_P_NODE_105642_length_169_cov_0.866667_g103414_i0 PRJNA1255065 105642 169 0.866667 1.46466723 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.004   NTclustered gi|2082258215|ref|XM_043067332.1| 3055 g103414 i0 96.875 0.189349112426035 32 1 19 0 44 75 4515 4484 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467580v5), mRNA blastn 32 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
30737179 30737179 PRJNA1255065_P_NODE_120814_length_167_cov_0.881356_g118586_i0 PRJNA1255065 120814 167 0.881356 1.47186452 Chlorella sorokiniana 3076 Plants Plants 106 3.21e-25   NR PRW59862.1 3076 g118586 i0 100 0.988023952095808 55 0 98.8 0 167 3 63 117 PRW59862.1 conserved oligomeric Golgi complex subunit 8-like [Chlorella sorokiniana] diamond 165 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
31970333 31970333 PRJNA1255065_P_NODE_111338_length_168_cov_0.873950_g109110_i0 PRJNA1255065 111338 168 0.87395 1.468236 Coccomyxa sp. Obi 2315456 Plants Plants 65.5 1.65e-11   NR BDA42369.1 2315456 g109110 i0 62.5 1 56 20 98.2 1 1 165 73 128 BDA42369.1 40S ribosomal protein S19 [Coccomyxa sp. Obi] diamond 168 65.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
32558116 32558116 PRJNA1255065_P_NODE_145319_length_163_cov_0.912281_g143091_i0 PRJNA1255065 145319 163 0.912281 1.48701803 root 1 Root_unresolved Root_unresolved 70.5 8.14e-13   NR XP_007511856.1 41875 g143091 i0 64.8 13.8036809815951 54 16 93.9 1 156 4 172 225 XP_007511856.1 uracil-DNA glycosylase [Bathycoccus prasinos] diamond 2250 70.9 0.994358251057828 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;