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contig_metadata

13 rows where bioproject = "PRJNA1255065", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 13 ✖

tax_clade 1

  • Sar · 13 ✖

bioproject 1

  • PRJNA1255065 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1635288 1635288 PRJNA1255065_P_NODE_68062_length_224_cov_0.965714_g65834_i0 PRJNA1255065 68062 224 0.965714 2.16319936 Pythium chondricola 289597 SAR_Eukaryotes SAR_Eukaryotes 399 6.169999999999998e-107   NTclustered gi|51235474|gb|AY598620.1| 289597 g65834 i0 98.661 99.7857142857143 224 3 100 0 1 224 2135 1912 Pythium chondricola strain CBS 203.85 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22352 399 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium chondricola
4880994 4880994 PRJNA1255065_P_NODE_101224_length_173_cov_1.153226_g98996_i0 PRJNA1255065 101224 173 1.153226 1.99508098 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 309 7.81e-80   NTclustered gi|1923460172|gb|MW187638.1| 1125843 g98996 i0 98.844 99.635838150289 173 2 100 0 1 173 282 454 Aphanomyces sinensis isolate CCRJB_22 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 17237 309 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sinensis
6156387 6156387 PRJNA1255065_P_NODE_96325_length_178_cov_1.565891_g94097_i0 PRJNA1255065 96325 178 1.565891 2.78728598 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 329 6.21e-86   NTclustered gi|2832795190|gb|PQ465262.1| 88834 g94097 i0 100 95.0730337078652 178 0 100 0 1 178 3120 3297 Pythium porphyrae isolate Bangia fuscopurpurea small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16923 329 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium porphyrae
12532227 12532227 PRJNA1255065_P_NODE_86950_length_190_cov_1.460993_g84722_i0 PRJNA1255065 86950 190 1.460993 2.7758867 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 344 2.3999999999999993e-90   NTclustered gi|2832795190|gb|PQ465262.1| 88834 g84722 i0 99.471 99.4631578947368 189 1 99 0 2 190 2913 3101 Pythium porphyrae isolate Bangia fuscopurpurea small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18898 346 0.994219653179191 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium porphyrae
15663366 15663366 PRJNA1255065_P_NODE_59813_length_247_cov_3.146465_g57585_i0 PRJNA1255065 59813 247 3.146465 7.77176855 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 418 1.9099999999999998e-112   NTclustered gi|166044475|emb|CU367384.1| 100861 g57585 i0 97.166 40 247 7 100 0 1 247 380 626 Aphanomyces euteiches cDNA blastn 9880 418 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16936998 16936998 PRJNA1255065_P_NODE_101514_length_172_cov_2.113821_g99286_i0 PRJNA1255065 101514 172 2.113821 3.63577212 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 268 1.32e-67   NTclustered gi|166044613|emb|CU367522.1| 100861 g99286 i0 94.767 111.220930232558 172 9 100 0 1 172 198 369 Aphanomyces euteiches cDNA blastn 19130 268 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17631124 17631124 PRJNA1255065_P_NODE_63854_length_234_cov_3.281081_g61626_i0 PRJNA1255065 63854 234 3.281081 7.67772954 root 1 Root_unresolved Root_unresolved 361 3.0699999999999996e-95   NTclustered gi|166044612|emb|CU367521.1| 100861 g61626 i0 94.444 90.1495726495726 234 13 100 0 1 234 50 283 Aphanomyces euteiches cDNA blastn 21095 361 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
23312561 23312561 PRJNA1255065_P_NODE_47899_length_301_cov_2.456349_g45673_i0 PRJNA1255065 47899 301 2.456349 7.39361049 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 440 5.119999999999999e-119   NTclustered gi|166044524|emb|CU367433.1| 100861 g45673 i0 93.023 94.8073089700997 301 21 100 0 1 301 476 776 Aphanomyces euteiches cDNA blastn 28537 440 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24005273 24005273 PRJNA1255065_P_NODE_39219_length_361_cov_1.891026_g36998_i0 PRJNA1255065 39219 361 1.891026 6.82660386 root 1 Root_unresolved Root_unresolved 553 7.699999999999998e-153   NTclustered gi|166044644|emb|CU367553.1| 100861 g36998 i0 94.663 57.2382271468144 356 19 99 0 1 356 356 1 Aphanomyces euteiches cDNA blastn 20663 556 0.994604316546763 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24005374 24005374 PRJNA1255065_P_NODE_59079_length_250_cov_1.293532_g56851_i0 PRJNA1255065 59079 250 1.293532 3.23383 root 1 Root_unresolved Root_unresolved 296 9.47e-76   NTclustered gi|166046524|emb|CU367641.1| 100861 g56851 i0 88 45.408 250 30 100 0 1 250 201 450 Aphanomyces euteiches cDNA blastn 11352 296 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24586087 24586087 PRJNA1255065_P_NODE_109700_length_169_cov_0.858333_g107472_i0 PRJNA1255065 109700 169 0.858333 1.45058277 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 145 2.26e-30   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g107472 i0 90.179 60.6331360946746 112 9 66 2 13 123 41766 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 10247 145 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
27042221 27042221 PRJNA1255065_P_NODE_132802_length_165_cov_0.896552_g130574_i0 PRJNA1255065 132802 165 0.896552 1.4793108 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 49.7 4.73e-5   NR TMW59608.1 41045 g130574 i0 42.9 1.87272727272727 49 28 89.1 0 4 150 239 287 TMW59608.1 hypothetical protein Poli38472_004677 [Pythium oligandrum] diamond 309 49.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31893339 31893339 PRJNA1255065_P_NODE_134137_length_165_cov_0.879310_g131909_i0 PRJNA1255065 134137 165 0.87931 1.4508615 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 58.5 3.21e-8   NR CCI49143.1 65357 g131909 i0 45.3 5.78181818181818 53 29 96.4 0 161 3 290 342 CCI49143.1 unnamed protein product [Albugo candida] diamond 954 58.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;