RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1255065", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1255065 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20762011 20762011 PRJNA1255065_P_NODE_62177_length_240_cov_1.083770_g59949_i0 PRJNA1255065 62177 240 1.08377 2.601048 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 217 7.23e-52   NTclustered gi|657012566|gb|KF302620.1| 2850 g59949 i0 84.716 77.75 229 21 93 10 1 223 539 759 Phaeodactylum tricornutum clone C821 hypothetical protein mRNA, complete cds blastn 18660 217 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23312193 23312193 PRJNA1255065_P_NODE_129039_length_165_cov_0.896552_g126811_i0 PRJNA1255065 129039 165 0.896552 1.4793108 Licmophora juergensii 210598 SAR_Eukaryotes SAR_Eukaryotes 78.7 2.28e-10   NTclustered gi|2862228907|gb|PQ645541.1| 210598 g126811 i0 86.957 13.3333333333333 69 9 42 0 97 165 3814 3882 Licmophora juergensii isolate AGSB0420 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2200 78.7 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Licmophorales Licmophoraceae Licmophora Licmophora juergensii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;