RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1255065", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1255065 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3603814 3603814 PRJNA1255065_P_NODE_50223_length_288_cov_5.615063_g47997_i0 PRJNA1255065 50223 288 5.615063 16.17138144 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 532 7.8e-147   NTclustered gi|300078496|gb|GU001158.1| 5778 g47997 i0 100 52.5972222222222 288 0 100 0 1 288 1235 948 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15148 532 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11256536 11256536 PRJNA1255065_P_NODE_31009_length_446_cov_1.569270_g28796_i0 PRJNA1255065 31009 446 1.56927 6.9989442 Vermamoeba 1260114 Tubulinea other_Eukaryota 813 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g28796 i0 99.552 42.7780269058296 446 2 100 0 1 446 2402 2847 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19079 813 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11839220 11839220 PRJNA1255065_P_NODE_80490_length_200_cov_1.033113_g78262_i0 PRJNA1255065 80490 200 1.033113 2.066226 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 324 3.33e-84   NTclustered gi|292559443|ref|NC_013986.1| 5778 g78262 i0 95.98 1.995 199 8 99 0 1 199 26415 26613 Hartmannella vermiformis mitochondrion, complete genome blastn 399 324 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15080788 15080788 PRJNA1255065_P_NODE_147432_length_162_cov_2.141593_g145204_i0 PRJNA1255065 147432 162 2.141593 3.46938066 Vermamoeba 1260114 Tubulinea other_Eukaryota 300 4.36e-77   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g145204 i0 100 100 162 0 100 0 1 162 278 117 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 16200 300 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22037414 22037414 PRJNA1255065_P_NODE_95758_length_179_cov_1.192308_g93530_i0 PRJNA1255065 95758 179 1.192308 2.13423132 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 231 1.8100000000000002e-56   NTclustered gi|292559443|ref|NC_013986.1| 5778 g93530 i0 90.96 69.2793296089386 177 8 98 5 4 179 26997 27166 Hartmannella vermiformis mitochondrion, complete genome blastn 12401 231 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;