RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1255065", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1255065 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9288714 9288714 PRJNA1255065_P_NODE_67588_length_225_cov_1.170455_g65360_i0 PRJNA1255065 67588 225 1.170455 2.63352375 Schizoplasmodiopsis amoeboidea 435420 Evosea other_Eukaryota 416 6.159999999999998e-112   NTclustered gi|260909292|gb|FJ766478.1| 435420 g65360 i0 100 56.4266666666667 225 0 100 0 1 225 1531 1307 Schizoplasmodiopsis amoeboidea strain BG7A-12B piece G 18S ribosomal RNA gene, partial sequence blastn 12696 416 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis amoeboidea
14389171 14389171 PRJNA1255065_P_NODE_133332_length_165_cov_0.896552_g131104_i0 PRJNA1255065 133332 165 0.896552 1.4793108 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 174 2.82e-39   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g131104 i0 86.061 2.00606060606061 165 19 100 3 1 165 11281 11441 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 331 174 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
16937749 16937749 PRJNA1255065_P_NODE_62934_length_237_cov_2.148936_g60706_i0 PRJNA1255065 62934 237 2.148936 5.09297832 Schizoplasmodiopsis amoeboidea 435420 Evosea other_Eukaryota 438 1.4e-118   NTclustered gi|260909292|gb|FJ766478.1| 435420 g60706 i0 100 85.1983122362869 237 0 100 0 1 237 738 974 Schizoplasmodiopsis amoeboidea strain BG7A-12B piece G 18S ribosomal RNA gene, partial sequence blastn 20192 438 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis amoeboidea
18904660 18904660 PRJNA1255065_P_NODE_143615_length_163_cov_0.912281_g141387_i0 PRJNA1255065 143615 163 0.912281 1.48701803 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 4.72e-27   NTclustered gi|85062629|gb|DQ340387.1| 142831 g141387 i0 87.179 76.0306748466258 117 15 72 0 12 128 15226 15110 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 12393 134 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
19486578 19486578 PRJNA1255065_P_NODE_71116_length_217_cov_1.238095_g68888_i0 PRJNA1255065 71116 217 1.238095 2.68666615 Soliformovum irregulare 435424 Evosea other_Eukaryota 147 8.549999999999999e-31   NTclustered gi|381139238|emb|HE655045.1| 435424 g68888 i0 87.597 5.70967741935484 129 13 59 3 90 217 335 209 Soliformovum irregulare partial 28S rRNA gene, strain ATCC 26826 blastn 1239 147 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;