RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1253698" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1253698 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13113576 13113576 PRJNA1253698_S_NODE_8171_length_240_cov_9.413613_g7805_i0 PRJNA1253698 8171 240 9.413613 22.5926712 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.022   NTclustered gi|323706731|gb|CP002529.1| 985053 g7805 i0 100 0.116666666666667 28 0 12 0 145 172 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
20178986 20178986 PRJNA1253698_S_NODE_6156_length_277_cov_1.267544_g5790_i0 PRJNA1253698 6156 277 1.267544 3.51109688 Halalkalicoccus 332246 Archaea Archaea 492 1.27e-134   NTclustered gi|451174082|gb|JX865686.1| 115547 g5790 i0 100 96.0324909747292 266 0 96 0 11 276 277 542 Uncultured archaeon clone CR5_22_GC 16S ribosomal RNA gene, partial sequence blastn 26601 492 1 Archaea               uncultured archaeon
21454665 21454665 PRJNA1253698_S_NODE_4017_length_347_cov_48.013423_g3651_i0 PRJNA1253698 4017 347 48.013423 166.60657781 Methanococcus 2184 Archaea Archaea 54.7 0.009   NTclustered gi|2891706660|gb|CP178162.1| 39152 g3651 i0 92.105 0.876080691642651 38 3 11 0 1 38 1411068 1411031 Methanococcus maripaludis strain LL chromosome, complete genome blastn 304 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
26661981 26661981 PRJNA1253698_S_NODE_5021_length_309_cov_1.661538_g4655_i0 PRJNA1253698 5021 309 1.661538 5.13415242 Sulfurisphaera javensis 2049879 Archaea Archaea 121 6.35e-34   NR WP_369609289.1 2049879 g4655 i0 98.4 0.592233009708738 61 1 59.2 0 254 72 2 62 WP_369609289.1 Sul7d family chromatin protein [Sulfurisphaera javensis] diamond 183 121 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfurisphaera Sulfurisphaera javensis
27390063 27390063 PRJNA1253698_S_NODE_19283_length_167_cov_0.881356_g18917_i0 PRJNA1253698 19283 167 0.881356 1.47186452 Methanobacteriota archaeon 2026739 Archaea Archaea 110 3.0899999999999998e-28   NR MCH7660394.1 2026739 g18917 i0 100 0.970059880239521 54 0 97 0 5 166 1 54 MCH7660394.1 ethanolamine ammonia-lyase subunit EutC [Methanobacteriota archaeon] diamond 162 110 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;