RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1253698", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1253698 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6737398 6737398 PRJNA1253698_S_NODE_20946_length_165_cov_0.896552_g20580_i0 PRJNA1253698 20946 165 0.896552 1.4793108 Tobamovirus fructirugosum 3432872 Viruses Viruses 305 9.59e-79   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g20580 i0 100 100 165 0 100 0 1 165 2469 2305 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 16500 305 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
17630362 17630362 PRJNA1253698_S_NODE_10594_length_212_cov_1.251534_g10228_i0 PRJNA1253698 10594 212 1.251534 2.65325208 Tobamovirus 12234 Viruses Viruses 381 2.0899999999999994e-101   NTclustered gi|2647550519|gb|OR843964.1| 12242 g10228 i0 100 97.1698113207547 206 0 97 0 7 212 2265 2060 Tobacco mosaic virus strain MR644-18E/3430 nonstructural polyprotein p183, nonstructural polyprotein p126, and movement protein genes, partial cds blastn 20600 381 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
24585953 24585953 PRJNA1253698_S_NODE_19980_length_166_cov_1.128205_g19614_i0 PRJNA1253698 19980 166 1.128205 1.8728203 Tobamovirus fructirugosum 3432872 Viruses Viruses 300 4.5e-77   NTclustered gi|1805995756|gb|MN882044.1| 1761477 g19614 i0 99.394 99.3975903614458 165 1 99 0 1 165 4654 4818 Tomato brown rugose fruit virus isolate 39563388_A, complete genome blastn 16500 300 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;