RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1253698", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1253698 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3603257 3603257 PRJNA1253698_S_NODE_22783_length_163_cov_0.903509_g22417_i0 PRJNA1253698 22783 163 0.903509 1.47271967 Campylobacter 194 Bacteria Bacteria 255 9.65e-64   NTclustered gi|1938724023|gb|CP060707.1| 199 g22417 i0 95.062 242.288343558282 162 8 99 0 2 163 723900 723739 Campylobacter concisus strain P1CDO2 chromosome, complete genome blastn 39493 255 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
6155457 6155457 PRJNA1253698_S_NODE_13805_length_189_cov_1.100000_g13439_i0 PRJNA1253698 13805 189 1.1 2.079 Helicobacter 209 Bacteria Bacteria 318 1.45e-82   NTclustered gi|1147511402|gb|CP019645.1| 37372 g13439 i0 100 117.259259259259 172 0 91 0 2 173 2385097 2384926 Helicobacter bilis strain AAQJH, complete genome blastn 22162 318 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bilis
9287825 9287825 PRJNA1253698_S_NODE_11308_length_206_cov_0.980892_g10942_i0 PRJNA1253698 11308 206 0.980892 2.02063752 Helicobacter cinaedi 213 Bacteria Bacteria 363 7.319999999999998e-96   NTclustered gi|2157106196|dbj|AP025196.1| 213 g10942 i0 100 123.776699029126 196 0 95 0 4 199 135687 135882 Helicobacter cinaedi T36 DNA, complete genome blastn 25498 363 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
12531351 12531351 PRJNA1253698_S_NODE_17090_length_172_cov_1.252033_g16724_i0 PRJNA1253698 17090 172 1.252033 2.15349676 root 1 Root_unresolved Root_unresolved 294 2.17e-75   NTclustered gi|15021682|gb|AF396081.1| 213 g16724 i0 99.383 107.273255813953 162 1 94 0 4 165 162 1 Helicobacter cinaedi isolate 31111 16S ribosomal RNA gene, partial sequence blastn 18451 294 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
15662546 15662546 PRJNA1253698_S_NODE_16473_length_175_cov_0.809524_g16107_i0 PRJNA1253698 16473 175 0.809524 1.416667 Campylobacter ureolyticus 827 Bacteria Bacteria 270 3.739999999999999e-68   NTclustered gi|240265855|gb|GQ167692.1| 827 g16107 i0 94.828 242.668571428571 174 7 99 2 1 173 1663 1491 Bacteroides ureolyticus strain UNSWJ 23S ribosomal RNA gene, partial sequence blastn 42467 270 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
22729580 22729580 PRJNA1253698_S_NODE_21478_length_164_cov_1.330435_g21112_i0 PRJNA1253698 21478 164 1.330435 2.1819134 Campylobacter 194 Bacteria Bacteria 287 3.45e-73   NTclustered gi|1622745323|gb|CP012543.1| 203 g21112 i0 98.182 242.768292682927 165 2 100 1 1 164 158875 158711 Campylobacter rectus strain ATCC 33238, complete genome blastn 39814 287 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
28463571 28463571 PRJNA1253698_S_NODE_13626_length_190_cov_1.070922_g13260_i0 PRJNA1253698 13626 190 1.070922 2.0347518 Helicobacter pylori 210 Bacteria Bacteria 90.5 3.48e-22   NR GAA8854446.1 210 g13260 i0 84.5 0.91578947368421 58 9 91.6 0 180 7 13 70 GAA8854446.1 hypothetical protein Kyoto154A_1380 [Helicobacter pylori] diamond 174 90.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31116214 31116214 PRJNA1253698_S_NODE_4495_length_327_cov_37.428058_g4129_i0 PRJNA1253698 4495 327 37.428058 122.38974966 Helicobacter pylori 210 Bacteria Bacteria 80.1 1.34e-17   NR GAA8838853.1 210 g4129 i0 92.5 0.36697247706422 40 3 36.7 0 325 206 4 43 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 120 80.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;