RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1253698", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1253698 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1634462 1634462 PRJNA1253698_S_NODE_5102_length_306_cov_2.186770_g4736_i0 PRJNA1253698 5102 306 2.18677 6.6915162 Terriglobia bacterium 2081523 Bacteria Bacteria 433 8.72e-117   NTclustered gi|2874253966|emb|OY970291.1| 2081523 g4736 i0 92.182 264.653594771242 307 22 100 2 1 306 141114 141419 MAG: Terriglobia bacterium isolate MFD05513.bin.c.1 genome assembly, chromosome: 1 blastn 80984 433 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
2910299 2910299 PRJNA1253698_S_NODE_11143_length_207_cov_1.316456_g10777_i0 PRJNA1253698 11143 207 1.316456 2.72506392 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 353 4.429999999999999e-93   NTclustered gi|2874254120|emb|OY970205.1| 194844 g10777 i0 97.585 104.009661835749 207 3 99 2 1 206 2084062 2084267 MAG: uncultured Acidobacteriaceae bacterium isolate MFD02248.bin.1.24 genome assembly, chromosome: 1 blastn 21530 353 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
4186751 4186751 PRJNA1253698_S_NODE_17204_length_171_cov_1.893443_g16838_i0 PRJNA1253698 17204 171 1.893443 3.23778753 Edaphobacter paludis 3035702 Bacteria Bacteria 267 4.699999999999999e-67   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g16838 i0 95.238 62.8713450292398 168 8 98 0 2 169 662736 662569 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 10751 267 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis
18211372 18211372 PRJNA1253698_S_NODE_18735_length_168_cov_0.873950_g18369_i0 PRJNA1253698 18735 168 0.87395 1.468236 Bacteria 2 Bacteria Bacteria 107 5.72e-28   NR HWY26806.1 2976921 g18369 i0 87.3 4.91071428571429 55 7 98.2 0 166 2 42 96 HWY26806.1 (2Fe-2S)-binding protein [Candidatus Angelobacter sp.] diamond 825 107 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia     Candidatus Angelobacter Candidatus Angelobacter sp.
18904173 18904173 PRJNA1253698_S_NODE_12195_length_199_cov_1.986667_g11829_i0 PRJNA1253698 12195 199 1.986667 3.95346733 Acidobacterium 33973 Bacteria Bacteria 226 9.619999999999998e-55   NTclustered gi|470484216|ref|NR_076636.1| 33075 g11829 i0 87.562 132.180904522613 201 18 100 6 1 199 322 127 Acidobacterium capsulatum strain 161 23S ribosomal RNA gene, complete sequence blastn 26304 226 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum
20761249 20761249 PRJNA1253698_S_NODE_2657_length_437_cov_2.059278_g2294_i0 PRJNA1253698 2657 437 2.059278 8.99904486 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 717 0   NTclustered gi|2874253956|emb|OY970281.1| 194844 g2294 i0 96.33 106.036613272311 436 16 99 0 2 437 422556 422121 MAG: uncultured Acidobacteriaceae bacterium isolate MFD00008.bin.c.2 genome assembly, chromosome: 1 blastn 46338 717 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
31134051 31134051 PRJNA1253698_S_NODE_22455_length_163_cov_0.912281_g22089_i0 PRJNA1253698 22455 163 0.912281 1.48701803 Pseudomonadati 3379134 Bacteria Bacteria 101 1.68e-23   NR HEY2861336.1 1964191 g22089 i0 92.5 9.88343558282209 53 4 97.5 0 4 162 168 220 HEY2861336.1 amidohydrolase family protein [Terracidiphilus sp.] diamond 1611 102 0.990196078431373 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;