RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1253698", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1253698 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
359562 359562 PRJNA1253698_S_NODE_17821_length_169_cov_1.200000_g17455_i0 PRJNA1253698 17821 169 1.2 2.028 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 265 1.66e-66   NTclustered gi|2874253789|emb|OY969773.1| 412054 g17455 i0 95.758 14.8343195266272 165 6 97 1 2 165 421832 421668 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 2507 265 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2910386 2910386 PRJNA1253698_S_NODE_9803_length_220_cov_1.128655_g9437_i0 PRJNA1253698 9803 220 1.128655 2.483041 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 217 6.529999999999999e-52   NTclustered gi|2874253789|emb|OY969773.1| 412054 g9437 i0 84.685 2.01818181818182 222 28 99 6 2 220 421168 420950 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 444 217 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9287909 9287909 PRJNA1253698_S_NODE_8348_length_238_cov_1.375661_g7982_i0 PRJNA1253698 8348 238 1.375661 3.27407318 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 230 9.199999999999998e-56   NTclustered gi|2874253789|emb|OY969773.1| 412054 g7982 i0 85.153 2.8109243697479 229 28 96 5 1 225 422112 422338 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 669 230 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10563801 10563801 PRJNA1253698_S_NODE_7089_length_258_cov_1.311005_g6723_i0 PRJNA1253698 7089 258 1.311005 3.3823929 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 381 2.639999999999999e-101   NTclustered gi|575456455|gb|CP007128.1| 861299 g6723 i0 93.436 400.934108527132 259 13 99 4 2 258 3043243 3042987 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 103441 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;