RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1253698", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1253698 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3603140 3603140 PRJNA1253698_S_NODE_10183_length_216_cov_1.221557_g9817_i0 PRJNA1253698 10183 216 1.221557 2.63856312 Naegleria 5761 Heterolobosea other_Eukaryota 398 2.1299999999999996e-106   NTclustered gi|2618963742|gb|OR769034.1| 5762 g9817 i0 100 10.1666666666667 215 0 99 0 2 216 5714 5500 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2196 398 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12531303 12531303 PRJNA1253698_S_NODE_12970_length_194_cov_0.951724_g12604_i0 PRJNA1253698 12970 194 0.951724 1.84634456 Naegleria 5761 Heterolobosea other_Eukaryota 346 6.860000000000001e-91   NTclustered gi|2618963742|gb|OR769034.1| 5762 g12604 i0 98.964 34.2474226804124 193 2 99 0 2 194 4099 3907 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6644 346 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22036303 22036303 PRJNA1253698_S_NODE_14258_length_186_cov_1.124088_g13892_i0 PRJNA1253698 14258 186 1.124088 2.09080368 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 305 1.11e-78   NTclustered gi|290991238|ref|XM_002678197.1| 5762 g13892 i0 96.237 1 186 7 100 0 1 186 189 4 Naegleria gruberi ribosomal protein L29-like protein (NAEGRDRAFT_36411), mRNA blastn 186 305 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;