RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1253303" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1253303 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1634271 1634271 PRJNA1253303_P_NODE_5942_length_250_cov_0.881356_g5920_i0 PRJNA1253303 5942 250 0.881356 2.20339 Akkermansia muciniphila 239935 Bacteria Bacteria 462 8.83e-126   NTclustered gi|1888387165|gb|CP058562.1| 239935 g5920 i0 100 96 250 0 100 0 1 250 1299672 1299423 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 24000 462 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
9287689 9287689 PRJNA1253303_P_NODE_6968_length_247_cov_0.896552_g6946_i0 PRJNA1253303 6968 247 0.896552 2.21448344 Akkermansia muciniphila 239935 Bacteria Bacteria 451 1.88e-122   NTclustered gi|1554502134|gb|CP025835.1| 239935 g6946 i0 99.595 40.9514170040486 247 1 100 0 1 247 2028187 2027941 Akkermansia muciniphila strain EB-AMDK-20 chromosome, complete genome blastn 10115 451 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
13113324 13113324 PRJNA1253303_P_NODE_4991_length_253_cov_0.866667_g4969_i0 PRJNA1253303 4991 253 0.866667 2.19266751 Akkermansia muciniphila 239935 Bacteria Bacteria 468 1.92e-127   NTclustered gi|1888387165|gb|CP058562.1| 239935 g4969 i0 100 98.802371541502 253 0 100 0 1 253 330140 329888 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 24997 468 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
18904092 18904092 PRJNA1253303_P_NODE_7595_length_245_cov_0.906977_g7573_i0 PRJNA1253303 7595 245 0.906977 2.22209365 Akkermansia 239934 Bacteria Bacteria 448 2.41e-121   NTclustered gi|2051372449|gb|CP072027.1| 2927224 g7573 i0 99.592 15 245 1 100 0 1 245 2540552 2540796 Akkermansia massiliensis strain Akk1863 chromosome, complete genome blastn 3675 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
23311685 23311685 PRJNA1253303_P_NODE_5339_length_252_cov_0.871508_g5317_i0 PRJNA1253303 5339 252 0.871508 2.19620016 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 228 3.5399999999999984e-55   NTclustered gi|2874253768|emb|OY969715.1| 412056 g5317 i0 83.004 1.00396825396825 253 41 100 2 1 252 3986251 3986000 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 253 228 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23311711 23311711 PRJNA1253303_P_NODE_6359_length_249_cov_0.886364_g6337_i0 PRJNA1253303 6359 249 0.886364 2.20704636 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 126 8.94e-34   NR HZJ15226.1 2811408 g6337 i0 79.3 0.987951807228916 82 17 98.8 0 247 2 123 204 HZJ15226.1 glutamate 5-kinase [Chthoniobacteraceae bacterium] diamond 246 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
24004554 24004554 PRJNA1253303_P_NODE_5279_length_252_cov_0.871508_g5257_i0 PRJNA1253303 5279 252 0.871508 2.19620016 Akkermansia 239934 Bacteria Bacteria 466 6.89e-127   NTclustered gi|2051350654|gb|CP072036.1| 2927224 g5257 i0 100 100 252 0 100 0 1 252 2223359 2223108 Akkermansia massiliensis strain Akk1573 chromosome, complete genome blastn 25200 466 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
28242208 28242208 PRJNA1253303_P_NODE_4926_length_253_cov_0.866667_g4904_i0 PRJNA1253303 4926 253 0.866667 2.19266751 uncultured Chthoniobacterales bacterium 1836801 Bacteria Bacteria 136 1.7799999999999998e-37   NR CAA9226802.1 1836801 g4904 i0 88 0.889328063241107 75 9 88.9 0 27 251 3 77 CAA9226802.1 MAG: hypothetical protein AVDCRST_MAG42-897 [uncultured Chthoniobacterales bacterium] diamond 225 136 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     uncultured Chthoniobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;