RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1253303" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1253303 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9287649 9287649 PRJNA1253303_P_NODE_5268_length_252_cov_0.871508_g5246_i0 PRJNA1253303 5268 252 0.871508 2.19620016 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 215 2.75e-51   NTclustered gi|2874253978|emb|OY970303.1| 412054 g5246 i0 82.558 1.02380952380952 258 31 98 7 1 247 3599513 3599767 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 258 215 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15662413 15662413 PRJNA1253303_P_NODE_8313_length_242_cov_0.923077_g8291_i0 PRJNA1253303 8313 242 0.923077 2.23384634 FCB group 1783270 Bacteria Bacteria 100 1.27e-22   NR HEV8400734.1 2448054 g8291 i0 66.7 4.52479338842975 72 24 89.3 0 23 238 558 629 HEV8400734.1 GNAT family N-acetyltransferase [Gemmatimonadales bacterium] diamond 1095 101 0.99009900990099 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
19485533 19485533 PRJNA1253303_P_NODE_7836_length_244_cov_0.912281_g7814_i0 PRJNA1253303 7836 244 0.912281 2.22596564 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 254 5.62e-63   NTclustered gi|575456455|gb|CP007128.1| 861299 g7814 i0 85.833 4.66393442622951 240 32 98 2 5 243 543071 542833 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 1138 254 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
28670853 28670853 PRJNA1253303_P_NODE_7287_length_246_cov_0.901734_g7265_i0 PRJNA1253303 7287 246 0.901734 2.21826564 Roseisolibacter 2093335 Bacteria Bacteria 113 6.61e-27   NR WP_284351320.1 2014610 g7265 i0 63.8 2.95121951219512 80 29 97.6 0 240 1 88 167 WP_284351320.1 ABC transporter permease [Roseisolibacter agri] diamond 726 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
28968654 28968654 PRJNA1253303_P_NODE_7908_length_244_cov_0.912281_g7886_i0 PRJNA1253303 7908 244 0.912281 2.22596564 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.4 0.00392   NR MEP7064487.1 2026742 g7886 i0 45.6 0.700819672131147 57 28 70.1 1 196 26 1 54 MEP7064487.1 NmrA family NAD(P)-binding protein [Gemmatimonadota bacterium] diamond 171 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32886227 32886227 PRJNA1253303_P_NODE_7340_length_246_cov_0.901734_g7318_i0 PRJNA1253303 7340 246 0.901734 2.21826564 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 85.9 7.07e-18   NR MDQ3997310.1 2026742 g7318 i0 58.4 0.939024390243902 77 31 93.9 1 232 2 2 77 MDQ3997310.1 hypothetical protein [Gemmatimonadota bacterium] diamond 231 85.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;