RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1253303" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1253303 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5462819 5462819 PRJNA1253303_P_NODE_6565_length_248_cov_0.891429_g6543_i0 PRJNA1253303 6565 248 0.891429 2.21074392 Chloroflexota bacterium 2026724 Bacteria Bacteria 105 2.9e-25   NR MDQ3695428.1 2026724 g6543 i0 72 1.98387096774194 82 23 99.2 0 2 247 187 268 MDQ3695428.1 ketopantoate reductase family protein [Chloroflexota bacterium] diamond 492 105 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
10563604 10563604 PRJNA1253303_P_NODE_7829_length_244_cov_0.912281_g7807_i0 PRJNA1253303 7829 244 0.912281 2.22596564 Chloroflexia bacterium 2448782 Bacteria Bacteria 158 7.989999999999998e-47   NR HKP52369.1 2448782 g7807 i0 97.5 0.995901639344262 81 2 99.6 0 2 244 62 142 HKP52369.1 50S ribosomal protein L3 [Chloroflexia bacterium] diamond 243 158 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
15662414 15662414 PRJNA1253303_P_NODE_8333_length_242_cov_0.923077_g8311_i0 PRJNA1253303 8333 242 0.923077 2.23384634 Bacteria 2 Bacteria Bacteria 117 4.91e-31   NR MDQ3547476.1 2026724 g8311 i0 76.3 2.97520661157025 80 19 99.2 0 3 242 81 160 MDQ3547476.1 zinc metallopeptidase [Chloroflexota bacterium] diamond 720 118 0.991525423728814 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27042212 27042212 PRJNA1253303_P_NODE_8462_length_242_cov_0.923077_g8440_i0 PRJNA1253303 8462 242 0.923077 2.23384634 Roseiflexaceae bacterium 2762507 Bacteria Bacteria 78.6 8.78e-15   NR MDW8145706.1 2762507 g8440 i0 55.4 0.91735537190082606 74 32 91.7 1 240 19 470 542 MDW8145706.1 ATP-binding protein [Roseiflexaceae bacterium] diamond 222 78.6 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae   Roseiflexaceae bacterium
27073769 27073769 PRJNA1253303_P_NODE_8222_length_243_cov_0.917647_g8200_i0 PRJNA1253303 8222 243 0.917647 2.22988221 Candidatus Limnocylindria bacterium 3047546 Bacteria Bacteria 58.9 3.04e-8   NR HUG47167.1 3047546 g8200 i0 54.2 0.888888888888889 72 29 86.4 3 212 3 2 71 HUG47167.1 CHRD domain-containing protein [Candidatus Limnocylindria bacterium] diamond 216 58.9 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria       Candidatus Limnocylindria bacterium
28368580 28368580 PRJNA1253303_P_NODE_5586_length_251_cov_0.876404_g5564_i0 PRJNA1253303 5586 251 0.876404 2.19977404 Chloroflexota bacterium 2026724 Bacteria Bacteria 97.4 1.47e-21   NR HEY7063531.1 2026724 g5564 i0 59 0.99203187250996006 83 34 99.2 0 250 2 99 181 HEY7063531.1 SEC-C domain-containing protein [Chloroflexota bacterium] diamond 249 97.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29505233 29505233 PRJNA1253303_P_NODE_5130_length_253_cov_0.866667_g5108_i0 PRJNA1253303 5130 253 0.866667 2.19266751 Chloroflexia bacterium 2448782 Bacteria Bacteria 74.7 8.92e-14   NR HEX8231172.1 2448782 g5108 i0 65.6 0.758893280632411 64 22 75.9 0 196 5 1 64 HEX8231172.1 NERD domain-containing protein [Chloroflexia bacterium] diamond 192 74.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
32431365 32431365 PRJNA1253303_P_NODE_6579_length_248_cov_0.891429_g6557_i0 PRJNA1253303 6579 248 0.891429 2.21074392 Chloroflexota 200795 Bacteria Bacteria 53.5 5.93e-6   NR MDE3228633.1 2026724 g6557 i0 37 6.7741935483871 81 45 98 2 247 5 183 257 MDE3228633.1 cobalamin B12-binding domain-containing protein [Chloroflexota bacterium] diamond 1680 53.9 0.992578849721707 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;