RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1253303" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1253303 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30800369 30800369 PRJNA1253303_P_NODE_4614_length_260_cov_1.251337_g4592_i0 PRJNA1253303 4614 260 1.251337 3.2534762 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 74.3 3.38e-13   NR GAX19063.1 1519565 g4592 i0 57.6 0.761538461538461 66 28 76.2 0 260 63 417 482 GAX19063.1 hypothetical protein FisN_8Hh289 [Fistulifera solaris] diamond 198 74.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris
31242782 31242782 PRJNA1253303_P_NODE_6695_length_248_cov_0.880000_g6673_i0 PRJNA1253303 6695 248 0.88 2.1824 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 50.1 1.02e-4   NR GFH52403.1 426638 g6673 i0 32.6 1.04032258064516 86 53 98 2 3 245 99 184 GFH52403.1 delta-4 fatty acid desaturase [Chaetoceros tenuissimus] diamond 258 50.1 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
32652050 32652050 PRJNA1253303_P_NODE_6700_length_248_cov_0.862857_g6678_i0 PRJNA1253303 6700 248 0.862857 2.13988536 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 113 5.58e-27   NR KAL3760522.1 259834 g6678 i0 68.8 3.87096774193548 80 25 96.8 0 243 4 235 314 KAL3760522.1 hypothetical protein ACHAWU_001857 [Discostella pseudostelligera] diamond 960 114 0.991228070175439 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Discostella Discostella pseudostelligera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;