RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1253303", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA1253303 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2327905 2327905 PRJNA1253303_P_NODE_4562_length_261_cov_1.622340_g4540_i0 PRJNA1253303 4562 261 1.62234 4.2343074 Polyangiales 3031712 Bacteria Bacteria 364 2.689999999999999e-96   NTclustered gi|1566495190|gb|CP012670.1| 56 g4540 i0 94.515 145.164750957854 237 12 91 1 2 238 2994843 2994608 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 37888 364 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
16936760 16936760 PRJNA1253303_P_NODE_6814_length_247_cov_0.896552_g6792_i0 PRJNA1253303 6814 247 0.896552 2.21448344 Stigmatella aurantiaca 41 Bacteria Bacteria 150 7.7e-32   NTclustered gi|309390350|gb|CP002271.1| 378806 g6792 i0 78.298 2.78947368421053 235 49 95 2 10 243 320639 320872 Stigmatella aurantiaca DW4/3-1, complete genome blastn 689 150 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
17630266 17630266 PRJNA1253303_P_NODE_3334_length_298_cov_1.257778_g3312_i0 PRJNA1253303 3334 298 1.257778 3.7481784399999998 Polyangiaceae bacterium 2268199 Bacteria Bacteria 114 4.01e-27   NR MCU0682355.1 2268199 g3312 i0 70 4.6006711409396 90 26 90.6 1 296 27 297 385 MCU0682355.1 NAD-dependent malic enzyme [Polyangiaceae bacterium] diamond 1371 114 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29252501 29252501 PRJNA1253303_P_NODE_5049_length_253_cov_0.866667_g5027_i0 PRJNA1253303 5049 253 0.866667 2.19266751 Myxococcota bacterium 2818507 Bacteria Bacteria 83.2 1.06e-16   NR HJN73008.1 2818507 g5027 i0 56.7 0.794466403162055 67 28 78.3 1 243 46 241 307 HJN73008.1 hypothetical protein [Myxococcota bacterium] diamond 201 83.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29599812 29599812 PRJNA1253303_P_NODE_6470_length_248_cov_0.891429_g6448_i0 PRJNA1253303 6470 248 0.891429 2.21074392 Polyangia bacterium 3058050 Bacteria Bacteria 151 5.68e-41   NR HEY0705573.1 3058050 g6448 i0 84.1 8.91532258064516 82 13 99.2 0 247 2 358 439 HEY0705573.1 DUF885 domain-containing protein [Polyangia bacterium] diamond 2211 151 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
31685533 31685533 PRJNA1253303_P_NODE_6577_length_248_cov_0.891429_g6555_i0 PRJNA1253303 6577 248 0.891429 2.21074392 Polyangiales bacterium 3034171 Bacteria Bacteria 114 1.93e-27   NR HEX6245791.1 3034171 g6555 i0 71.3 0.967741935483871 80 23 96.8 0 246 7 1127 1206 HEX6245791.1 AAA family ATPase [Polyangiales bacterium] diamond 240 114 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
32223591 32223591 PRJNA1253303_P_NODE_6718_length_247_cov_1.632184_g6696_i0 PRJNA1253303 6718 247 1.632184 4.03149448 Kofleriaceae bacterium 2212474 Bacteria Bacteria 58.9 7.81e-8   NR MBP8806380.1 2212474 g6696 i0 50.9 1.38461538461538 57 26 69.2 1 25 195 336 390 MBP8806380.1 hypothetical protein [Kofleriaceae bacterium] diamond 342 58.9 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;