RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1253303", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1253303 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15662397 15662397 PRJNA1253303_P_NODE_7733_length_244_cov_0.912281_g7711_i0 PRJNA1253303 7733 244 0.912281 2.22596564 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 157 1.86e-46   NR MFN3454541.1 2862747 g7711 i0 92.6 3.98360655737705 81 6 99.6 0 244 2 26 106 MFN3454541.1 3-oxoacid CoA-transferase subunit B [Pseudobdellovibrio sp.] diamond 972 157 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
26978843 26978843 PRJNA1253303_P_NODE_6002_length_250_cov_0.881356_g5980_i0 PRJNA1253303 6002 250 0.881356 2.20339 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 152 5.82e-44   NR MBY0452803.1 2026715 g5980 i0 90.2 0.984 82 8 98.4 0 248 3 23 104 MBY0452803.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 246 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31464508 31464508 PRJNA1253303_P_NODE_3516_length_292_cov_1.068493_g3494_i0 PRJNA1253303 3516 292 1.068493 3.11999956 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 62 1.12e-8   NR WP_015468752.1 453816 g3494 i0 54 0.513698630136986 50 22 50.3 1 148 2 340 389 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 150 62 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;