RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1253303", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1253303 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27295068 27295068 PRJNA1253303_P_NODE_6983_length_247_cov_0.896552_g6961_i0 PRJNA1253303 6983 247 0.896552 2.21448344 Abditibacteriales bacterium 2972663 Bacteria Bacteria 103 7.19e-26   NR MCS6859378.1 2972663 g6961 i0 55.8 2.08906882591093 86 33 98.4 1 243 1 32 117 MCS6859378.1 hypothetical protein [Abditibacteriales bacterium] diamond 516 103 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales     Abditibacteriales bacterium
30199968 30199968 PRJNA1253303_P_NODE_6692_length_248_cov_0.891429_g6670_i0 PRJNA1253303 6692 248 0.891429 2.21074392 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 85.9 1.82e-17   NR MBV9471018.1 2800791 g6670 i0 68.3 0.725806451612903 60 19 72.6 0 3 182 341 400 MBV9471018.1 metal-dependent hydrolase [Abditibacteriaceae bacterium] diamond 180 85.9 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;