RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1253303", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1253303 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1634235 1634235 PRJNA1253303_P_NODE_4342_length_267_cov_1.530928_g4320_i0 PRJNA1253303 4342 267 1.530928 4.08757776 Caenorhabditis elegans 6239 Nematoda Nematoda 494 3.38e-135   NTclustered gi|1972267543|ref|NM_070174.8| 6239 g4320 i0 100 3.00749063670412 267 0 100 0 1 267 572 306 Caenorhabditis elegans ER membrane protein complex subunit 3 (emc-3), partial mRNA blastn 803 494 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22036202 22036202 PRJNA1253303_P_NODE_7858_length_244_cov_0.912281_g7836_i0 PRJNA1253303 7858 244 0.912281 2.22596564 Caenorhabditis elegans 6239 Nematoda Nematoda 451 1.86e-122   NTclustered gi|11527010|gb|AF242767.1|AF242767 6239 g7836 i0 100 4.05737704918033 244 0 100 0 1 244 549 792 Caenorhabditis elegans SF2 mRNA, complete cds blastn 990 451 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27674232 27674232 PRJNA1253303_P_NODE_7124_length_246_cov_0.901734_g7102_i0 PRJNA1253303 7124 246 0.901734 2.21826564 Aphelenchoides fujianensis 1052528 Nematoda Nematoda 52 2.16e-5   NR KAI6219037.1 1052528 g7102 i0 34.1 1 82 52 100 2 1 246 323 402 KAI6219037.1 Plus3 domain-containing protein [Aphelenchoides fujianensis] diamond 246 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;