RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1253303", tax_clade = "Opisthokonta" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1253303 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28102247 28102247 PRJNA1253303_P_NODE_5425_length_252_cov_0.871508_g5403_i0 PRJNA1253303 5425 252 0.871508 2.19620016 root 1 Root_unresolved Root_unresolved 49.3 2.08e-4   NR XP_022100316.1 133434 g5403 i0 35.8 3.20238095238095 81 32 95.2 2 8 247 723 784 XP_022100316.1 uncharacterized protein LOC110984425 [Acanthaster planci] diamond 807 49.7 0.991951710261569 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
28747553 28747553 PRJNA1253303_P_NODE_1907_length_373_cov_1.040000_g1885_i0 PRJNA1253303 1907 373 1.04 3.8792 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 117 1.95e-29   NR XP_030850438.1 7668 g1885 i0 46.3 7.67292225201072 123 65 98.1 1 371 6 136 258 XP_030850438.1 40S ribosomal protein S4 [Strongylocentrotus purpuratus] diamond 2862 117 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
31956554 31956554 PRJNA1253303_P_NODE_5597_length_251_cov_0.876404_g5575_i0 PRJNA1253303 5597 251 0.876404 2.19977404 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 71.6 3.08e-14   NR XP_041485260.1 7654 g5575 i0 48.6 4.47011952191235 72 34 86.1 2 248 33 4 72 XP_041485260.1 cysteine-rich protein 1-like [Lytechinus variegatus] diamond 1122 71.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;