RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1253303", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA1253303 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8012957 8012957 PRJNA1253303_P_NODE_7027_length_247_cov_0.827586_g7005_i0 PRJNA1253303 7027 247 0.827586 2.04413742 Fungi 4751 Fungi Fungi 144 2.43e-39   NR KAI9008095.1 109897 g7005 i0 80.5 33.7773279352227 82 16 99.6 0 247 2 170 251 KAI9008095.1 actin family [Gaertneriomyces semiglobifer] diamond 8343 144 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
26680058 26680058 PRJNA1253303_P_NODE_3501_length_292_cov_1.543379_g3479_i0 PRJNA1253303 3501 292 1.543379 4.50666668 Fungi 4751 Fungi Fungi 132 1.27e-37   NR KAJ3051796.1 64517 g3479 i0 77.8 41.0958904109589 81 18 83.2 0 9 251 21 101 KAJ3051796.1 40S ribosomal protein S26 [Rhizophlyctis rosea] diamond 12000 132 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
26711580 26711580 PRJNA1253303_P_NODE_4641_length_259_cov_1.408602_g4619_i0 PRJNA1253303 4641 259 1.408602 3.64827918 root 1 Root_unresolved Root_unresolved 55.5 1.53e-6   NR ORX76328.1 1754192 g4619 i0 40.8 2.55984555984556 71 37 78.8 2 21 224 4506 4574 ORX76328.1 acetyl-CoA synthetase-like protein [Anaeromyces robustus] diamond 663 55.8 0.99462365591397806 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Anaeromyces Anaeromyces robustus
28463566 28463566 PRJNA1253303_P_NODE_5086_length_253_cov_0.866667_g5064_i0 PRJNA1253303 5086 253 0.866667 2.19266751 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 106 6.99e-27   NR KAH6566911.1 1357716 g5064 i0 59 3.90118577075099 83 34 98.4 0 249 1 34 116 KAH6566911.1 hypothetical protein BASA62_006437 [Batrachochytrium salamandrivorans] diamond 987 106 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
29523229 29523229 PRJNA1253303_P_NODE_910_length_510_cov_1.784897_g888_i0 PRJNA1253303 910 510 1.784897 9.1029747 Chytridiomycetes 451435 Fungi Fungi 235 1.65e-68   NR XP_016606688.1 645134 g888 i0 67.9 5.86470588235294 165 53 97.1 0 508 14 631 795 XP_016606688.1 uncharacterized protein SPPG_06329 [Spizellomyces punctatus DAOM BR117] diamond 2991 236 0.995762711864407 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
29757799 29757799 PRJNA1253303_P_NODE_8171_length_243_cov_0.917647_g8149_i0 PRJNA1253303 8171 243 0.917647 2.22988221 Phlyctochytrium arcticum 1117335 Fungi Fungi 56.6 4.98e-7   NR KAI9104834.1 1117335 g8149 i0 40 0.987654320987654 80 46 96.3 2 4 237 33 112 KAI9104834.1 armadillo-type protein [Phlyctochytrium arcticum] diamond 240 56.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium arcticum
29789356 29789356 PRJNA1253303_P_NODE_6691_length_248_cov_0.891429_g6669_i0 PRJNA1253303 6691 248 0.891429 2.21074392 Hyaloraphidium curvatum 82268 Fungi Fungi 155 1.1299999999999998e-41   NR KAI9016760.1 82268 g6669 i0 87.8 0.991935483870968 82 10 99.2 0 1 246 714 795 KAI9016760.1 P-loop containing nucleoside triphosphate hydrolase protein [Hyaloraphidium curvatum] diamond 246 155 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;