RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1253303" and tax_clade = "Metamonada"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA1253303 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14388586 14388586 PRJNA1253303_P_NODE_5512_length_251_cov_1.314607_g5490_i0 PRJNA1253303 5512 251 1.314607 3.29966357 Trimastix marina 137419 Preaxostyla other_Eukaryota 268 2.07e-67   NTclustered gi|84105342|gb|DQ295218.1| 137419 g5490 i0 86 92.9641434262948 250 35 99 0 1 250 911 1160 Trimastix marina beta tubulin gene, partial cds blastn 23334 268 1 Eukaryota Metamonada   Preaxostyla     Trimastigidae Trimastix Trimastix marina
16354975 16354975 PRJNA1253303_P_NODE_5573_length_251_cov_0.876404_g5551_i0 PRJNA1253303 5573 251 0.876404 2.19977404 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 96.7 8.379999999999999e-23   NR KAJ5070606.1 1746090 g5551 i0 52.6 1.9003984063745 76 36 90.8 0 2 229 50 125 KAJ5070606.1 ras and ef-hand domain-containing protein [Anaeramoeba ignava] diamond 477 96.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
24585732 24585732 PRJNA1253303_P_NODE_3980_length_278_cov_1.141463_g3958_i0 PRJNA1253303 3980 278 1.141463 3.17326714 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 291 4.98e-74   NTclustered gi|2794939692|ref|XM_067873584.1| 2049356 g3958 i0 85.87 92.8381294964029 276 35 99 4 1 274 1091 1364 Monocercomonoides exilis Tubulin alpha chain (MONOS_3576), mRNA blastn 25809 291 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
27642687 27642687 PRJNA1253303_P_NODE_5944_length_250_cov_0.881356_g5922_i0 PRJNA1253303 5944 250 0.881356 2.20339 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 50.8 5.63e-5   NR KAJ5075220.1 1746090 g5922 i0 44.9 0.936 78 40 91.2 2 241 14 269 345 KAJ5075220.1 bypass of stop codon protein [Anaeramoeba ignava] diamond 234 50.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;