RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1253303", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1253303 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18211098 18211098 PRJNA1253303_P_NODE_1535_length_406_cov_1.600601_g1513_i0 PRJNA1253303 1535 406 1.600601 6.49844006 Vannella ebro 207334 Discosea other_Eukaryota 545 1.47e-150   NTclustered gi|33946344|gb|AY294151.1| 207334 g1513 i0 90.887 99.7512315270936 406 37 100 0 1 406 15 420 Vannella ebro actin mRNA, complete cds blastn 40499 545 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella ebro
18211130 18211130 PRJNA1253303_P_NODE_3115_length_307_cov_0.995726_g3093_i0 PRJNA1253303 3115 307 0.995726 3.05687882 Platyamoeba placida 3454475 Discosea other_Eukaryota 448 3.1299999999999993e-121   NTclustered gi|33946348|gb|AY294153.1| 197527 g3093 i0 93.377 93.8925081433225 302 20 98 0 2 303 767 1068 Platyamoeba placida actin mRNA, partial cds blastn 28825 448 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
30421729 30421729 PRJNA1253303_P_NODE_7073_length_246_cov_0.901734_g7051_i0 PRJNA1253303 7073 246 0.901734 2.21826564 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.5 2.18e-8   NR XP_004333943.1 1257118 g7051 i0 39.4 0.804878048780488 66 38 80.5 2 242 45 411 474 XP_004333943.1 Lecithin:cholesterol acyltransferase [Acanthamoeba castellanii str. Neff] diamond 198 60.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30579093 30579093 PRJNA1253303_P_NODE_6673_length_248_cov_0.891429_g6651_i0 PRJNA1253303 6673 248 0.891429 2.21074392 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 5.65e-19   NR XP_004335476.1 1257118 g6651 i0 59.2 0.919354838709677 76 31 91.9 0 242 15 30 105 XP_004335476.1 uncharacterized protein ACA1_245660 [Acanthamoeba castellanii str. Neff] diamond 228 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32634237 32634237 PRJNA1253303_P_NODE_3080_length_308_cov_1.259574_g3058_i0 PRJNA1253303 3080 308 1.259574 3.87948792 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 113 2.63e-30   NR XP_004335921.1 1257118 g3058 i0 59.6 0.915584415584416 94 37 91.6 1 25 306 4 96 XP_004335921.1 uncharacterized protein ACA1_364340 [Acanthamoeba castellanii str. Neff] diamond 282 113 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;