RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA1249535" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1249535 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6734798 6734798 PRJNA1249535_S_NODE_251366_length_279_cov_3.024272_g247983_i0 PRJNA1249535 251366 279 3.024272 8.43771888 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|325187216|emb|FR824178.1| 890382 g247983 i0 100 0.100358422939068 28 0 10 0 119 146 28372 28345 Albugo laibachii Nc14, genomic contig CONTIG_133_NC14_v4_68809_223 blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
6736040 6736040 PRJNA1249535_S_NODE_44386_length_500_cov_2.604215_g41057_i0 PRJNA1249535 44386 500 2.604215 13.021075 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.049   NTclustered gi|325187216|emb|FR824178.1| 890382 g41057 i0 100 0.056 28 0 6 0 153 180 28372 28345 Albugo laibachii Nc14, genomic contig CONTIG_133_NC14_v4_68809_223 blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7430415 7430415 PRJNA1249535_S_NODE_80726_length_400_cov_4.198777_g77345_i0 PRJNA1249535 80726 400 4.198777 16.795108 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.038   NTclustered gi|325182251|emb|FR824070.1| 890382 g77345 i0 96.875 0.16 32 0 8 1 143 174 112267 112237 Albugo laibachii Nc14, genomic contig CONTIG_25_NC14_v4_162253_173 blastn 64 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14385291 14385291 PRJNA1249535_S_NODE_187432_length_313_cov_3.158333_g184049_i0 PRJNA1249535 187432 313 3.158333 9.88558229 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 58.4 6.29e-4   NTclustered gi|675174426|ref|XM_008897850.1| 761204 g184049 i0 100 0.389776357827476 31 0 10 0 283 313 1022 992 Phytophthora parasitica INRA-310 hypothetical protein, variant 2 mRNA blastn 122 58.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
27028455 27028455 PRJNA1249535_S_NODE_107842_length_367_cov_3.190476_g104459_i0 PRJNA1249535 107842 367 3.190476 11.70904692 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 57 1.51e-6   NR KAE9215043.1 53985 g104459 i0 35.5 2.28065395095368 93 59 76 1 6 284 382 473 KAE9215043.1 hypothetical protein PF004_g14871 [Phytophthora fragariae] diamond 837 57 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
27610970 27610970 PRJNA1249535_S_NODE_32844_length_557_cov_2.865702_g29575_i0 PRJNA1249535 32844 557 2.865702 15.96196014 Phytophthora rubi 129364 SAR_Eukaryotes SAR_Eukaryotes 50.1 0.00219   NR KAE9015137.1 129364 g29575 i0 36.4 0.355475763016158 66 42 35.5 0 313 116 247 312 KAE9015137.1 hypothetical protein PR001_g14969 [Phytophthora rubi] diamond 198 50.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora rubi
27674146 27674146 PRJNA1249535_S_NODE_208764_length_301_cov_6.135965_g205381_i0 PRJNA1249535 208764 301 6.135965 18.46925465 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 60.8 3.32e-8   NR KAJ0391852.1 114742 g205381 i0 41.2 2.68106312292359 68 40 67.8 0 240 37 652 719 KAJ0391852.1 hypothetical protein P43SY_010752 [Pythium insidiosum] diamond 807 60.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
28607571 28607571 PRJNA1249535_S_NODE_139507_length_342_cov_3.156134_g136124_i0 PRJNA1249535 139507 342 3.156134 10.79397828 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00981   NR KAE8877845.1 53985 g136124 i0 34.8 6.94736842105263 66 43 57.9 0 336 139 526 591 KAE8877845.1 hypothetical protein PF003_g37962 [Phytophthora fragariae] diamond 2376 46.2 0.991341991341991 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
30073603 30073603 PRJNA1249535_S_NODE_296132_length_255_cov_1.489011_g292749_i0 PRJNA1249535 296132 255 1.489011 3.79697805 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 46.2 0.00255   NR KAG2778066.1 29920 g292749 i0 32.4 5.45882352941176 68 46 80 0 244 41 182 249 KAG2778066.1 hypothetical protein Pcac1_g11532 [Phytophthora cactorum] diamond 1392 46.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
30263620 30263620 PRJNA1249535_S_NODE_297752_length_254_cov_1.723757_g294369_i0 PRJNA1249535 297752 254 1.723757 4.37834278 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 47.4 9.23e-4   NR KAF1334404.1 82926 g294369 i0 62.5 0.377952755905512 32 12 37.8 0 4 99 111 142 KAF1334404.1 Tkl protein kinase, partial [Globisporangium splendens] diamond 96 47.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
31893328 31893328 PRJNA1249535_S_NODE_206237_length_303_cov_2.243478_g202854_i0 PRJNA1249535 206237 303 2.243478 6.79773834 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 47.4 0.00185   NR KAE9215043.1 53985 g202854 i0 33.3 2.22772277227723 75 50 74.3 0 25 249 399 473 KAE9215043.1 hypothetical protein PF004_g14871 [Phytophthora fragariae] diamond 675 47.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
32494746 32494746 PRJNA1249535_S_NODE_43679_length_502_cov_36.000000_g40351_i0 PRJNA1249535 43679 502 36 180.72 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.7 0.00121   NR OWY93302.1 4795 g40351 i0 33.3 4.22509960159363 72 48 43 0 51 266 2 73 OWY93302.1 putative membrane protein, partial [Phytophthora megakarya] diamond 2121 50.1 0.992015968063872 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;