RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1249535" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1249535 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11255738 11255738 PRJNA1249535_S_NODE_159809_length_329_cov_2.839844_g156426_i0 PRJNA1249535 159809 329 2.839844 9.34308676 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|2124400097|ref|XM_044699040.1| 51637 g156426 i0 94.444 0.237082066869301 36 2 11 0 294 329 2429 2394 Naegleria lovaniensis uncharacterized protein (C9374_008911), partial mRNA blastn 78 56.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
19484292 19484292 PRJNA1249535_S_NODE_43256_length_504_cov_8.939675_g39929_i0 PRJNA1249535 43256 504 8.939675 45.055962 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 54.7 0.014   NTclustered gi|2124405156|ref|XM_044686647.1| 51637 g39929 i0 100 0.0575396825396825 29 0 6 0 384 412 52 24 Naegleria lovaniensis uncharacterized protein (C9374_011036), partial mRNA blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
19484601 19484601 PRJNA1249535_S_NODE_58636_length_449_cov_39.710106_g55270_i0 PRJNA1249535 58636 449 39.710106 178.29837594 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 56.5 0.003   NTclustered gi|2119430466|ref|XM_044691495.1| 51637 g55270 i0 100 0.721603563474387 30 0 7 0 294 323 474 445 Naegleria lovaniensis uncharacterized protein (C9374_002112), partial mRNA blastn 324 56.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
22032757 22032757 PRJNA1249535_S_NODE_170578_length_322_cov_6.590361_g167195_i0 PRJNA1249535 170578 322 6.590361 21.22096242 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 58.4 6.5e-4   NTclustered gi|2031922452|emb|OD955642.1| 5763 g167195 i0 92.683 1.27329192546584 41 2 13 1 232 272 7971 7932 Naegleria fowleri Karachi_NF001 strain blastn 410 58.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22035041 22035041 PRJNA1249535_S_NODE_47458_length_487_cov_5.637681_g44117_i0 PRJNA1249535 47458 487 5.637681 27.45550647 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.047   NTclustered gi|2124389050|ref|XM_044709371.1| 5763 g44117 i0 100 0.0574948665297741 28 0 6 0 157 184 1719 1746 Naegleria fowleri uncharacterized protein (FDP41_005806), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;