RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1249535", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Cossaviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249535 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10562923 10562923 PRJNA1249535_S_NODE_73129_length_414_cov_1.369501_g69748_i0 PRJNA1249535 73129 414 1.369501 5.66973414 Erythroparvovirus ungulate1 3052194 Viruses Viruses 749 0   NTclustered gi|1347731934|ref|NC_037053.1| 172297 g69748 i0 99.275 9.83091787439614 414 3 100 0 1 414 2675 3088 Bovine parvovirus 3 isolate ujs1794 nonstructural protein and structural protein genes, complete cds blastn 4070 749 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
14387097 14387097 PRJNA1249535_S_NODE_337292_length_227_cov_3.538961_g333909_i0 PRJNA1249535 337292 227 3.538961 8.03344147 Erythroparvovirus ungulate1 3052194 Viruses Viruses 414 2.2399999999999998e-111   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g333909 i0 99.559 7 227 1 100 0 1 227 4614 4388 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 1589 414 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
15658760 15658760 PRJNA1249535_S_NODE_159873_length_329_cov_2.675781_g156490_i0 PRJNA1249535 159873 329 2.675781 8.80331949 Erythroparvovirus ungulate1 3052194 Viruses Viruses 608 1.4599999999999995e-169   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g156490 i0 100 7.57142857142857 329 0 100 0 1 329 4170 3842 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 2491 608 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
15660414 15660414 PRJNA1249535_S_NODE_294253_length_256_cov_1.601093_g290870_i0 PRJNA1249535 294253 256 1.601093 4.09879808 Erythroparvovirus ungulate1 3052194 Viruses Viruses 473 4.189999999999999e-129   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g290870 i0 100 8.9140625 256 0 100 0 1 256 1980 2235 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 2282 473 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
23307502 23307502 PRJNA1249535_S_NODE_111459_length_364_cov_1.323024_g108076_i0 PRJNA1249535 111459 364 1.323024 4.81580736 Erythroparvovirus ungulate1 3052194 Viruses Viruses 348 3.93e-91   NTclustered gi|2277478564|gb|MZ502233.1| 172297 g108076 i0 99.476 3.65384615384615 191 1 52 0 1 191 3508 3318 Bovine parvovirus 3 isolate BCS1/USA nonstructural protein and structural protein genes, complete cds blastn 1330 348 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;