RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1249535" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1249535 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16932316 16932316 PRJNA1249535_S_NODE_106034_length_369_cov_1.287162_g102651_i0 PRJNA1249535 106034 369 1.287162 4.74962778 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.01   NTclustered gi|63014440|gb|AY945714.1| 11676 g102651 i0 96.875 0.0867208672086721 32 1 9 0 291 322 5800 5769 HIV-1 isolate 00TH.C1468HYP from Thailand gag and pol genes, partial sequence; vif, vpr, and tat genes, complete sequence; rev protein (rev) gene, complete cds; vpu and env genes, complete sequence; and nef gene, partial sequence blastn 32 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22729251 22729251 PRJNA1249535_S_NODE_11778_length_786_cov_4.751753_g9254_i0 PRJNA1249535 11778 786 4.751753 37.34877858 Viruses 10239 Viruses Viruses 73.1 6.05e-8   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g9254 i0 100 5.42620865139949 39 0 5 0 8 46 9505 9467 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 4265 73.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
30831915 30831915 PRJNA1249535_S_NODE_160194_length_329_cov_1.644531_g156811_i0 PRJNA1249535 160194 329 1.644531 5.41050699 Gammaretrovirus murleu 3428959 Viruses Viruses 217 2.8299999999999997e-66   NR 8WUS_E 11801 g156811 i0 100 8.86322188449848 108 0 98.5 0 327 4 178 285 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 2916 217 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;