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contig_metadata

22 rows where bioproject = "PRJNA1249535" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 22 ✖

bioproject 1

  • PRJNA1249535 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
355276 355276 PRJNA1249535_S_NODE_128281_length_350_cov_3.050542_g124898_i0 PRJNA1249535 128281 350 3.050542 10.676897 Methanosphaera stadtmanae 2317 Archaea Archaea 52.8 0.033   NTclustered gi|1721134173|emb|LR698975.1| 2317 g124898 i0 100 0.24 28 0 8 0 322 349 159729 159702 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 84 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
4184901 4184901 PRJNA1249535_S_NODE_313664_length_245_cov_7.139535_g310281_i0 PRJNA1249535 313664 245 7.139535 17.49186075 Methanosalsum zhilinae 39669 Archaea Archaea 56.5 0.002   NTclustered gi|335929340|gb|CP002101.1| 679901 g310281 i0 100 0.122448979591837 30 0 12 0 98 127 1665167 1665138 Methanosalsum zhilinae DSM 4017, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum Methanosalsum zhilinae
8012074 8012074 PRJNA1249535_S_NODE_59727_length_446_cov_7.222520_g56358_i0 PRJNA1249535 59727 446 7.22252 32.2124392 Methanocaldococcus vulcanius 73913 Archaea Archaea 54.7 0.012   NTclustered gi|261369124|gb|CP001787.1| 579137 g56358 i0 100 0.0650224215246637 29 0 7 0 154 182 1546970 1546942 Methanocaldococcus vulcanius M7, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius
11255809 11255809 PRJNA1249535_S_NODE_58369_length_450_cov_10.732095_g55003_i0 PRJNA1249535 58369 450 10.732095 48.2944275 Methanosarcina 2207 Archaea Archaea 56.5 0.003   NTclustered gi|1111741292|dbj|AP017646.1| 2210 g55003 i0 100 0.266666666666667 30 0 7 0 268 297 2444796 2444825 Methanosarcina thermophila DNA, complete genome, strain: MT-1 blastn 120 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila
14384403 14384403 PRJNA1249535_S_NODE_122432_length_354_cov_7.711744_g119049_i0 PRJNA1249535 122432 354 7.711744 27.29957376 Thermoplasmata archaeon 1906666 Archaea Archaea 52.8 0.033   NTclustered gi|2108430933|gb|CP070629.1| 1906666 g119049 i0 100 0.0790960451977401 28 0 8 0 308 335 888303 888276 MAG: Thermoplasmata archaeon isolate bin983 chromosome blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
15080046 15080046 PRJNA1249535_S_NODE_161952_length_328_cov_0.945098_g158569_i0 PRJNA1249535 161952 328 0.945098 3.09992144 Methanosarcina 2207 Archaea Archaea 52.8 0.031   NTclustered gi|805354519|gb|CP009508.1| 1434118 g158569 i0 100 0.25609756097561 28 0 9 0 76 103 2456182 2456209 Methanosarcina siciliae C2J, complete genome blastn 84 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina siciliae
16933579 16933579 PRJNA1249535_S_NODE_200154_length_306_cov_3.111588_g196771_i0 PRJNA1249535 200154 306 3.111588 9.52145928 Methanotorris igneus 2189 Archaea Archaea 52.8 0.029   NTclustered gi|333750483|gb|CP002737.1| 880724 g196771 i0 100 0.0915032679738562 28 0 9 0 67 94 230316 230343 Methanotorris igneus Kol 5, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus
19482290 19482290 PRJNA1249535_S_NODE_188136_length_313_cov_1.300000_g184753_i0 PRJNA1249535 188136 313 1.3 4.069 Methanosarcina barkeri 2208 Archaea Archaea 52.8 0.029   NTclustered gi|805384997|gb|CP009517.1| 1434107 g184753 i0 100 0.0894568690095847 28 0 9 0 128 155 4491270 4491297 Methanosarcina barkeri 3, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
20757158 20757158 PRJNA1249535_S_NODE_144977_length_338_cov_4.898113_g141594_i0 PRJNA1249535 144977 338 4.898113 16.55562194 Methanogenium organophilum 2199 Archaea Archaea 52.8 0.032   NTclustered gi|2388587735|gb|CP113361.1| 2199 g141594 i0 100 0.0828402366863905 28 0 8 0 151 178 1216724 1216751 Methanogenium organophilum strain DSM 3596 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium organophilum
20760537 20760537 PRJNA1249535_S_NODE_79137_length_403_cov_1.415152_g75756_i0 PRJNA1249535 79137 403 1.415152 5.70306256 Ferroplasma acidiphilum 74969 Archaea Archaea 52.8 0.039   NTclustered gi|2573967612|gb|CP133600.1| 74969 g75756 i0 100 0.0694789081885856 28 0 7 0 167 194 274902 274875 MAG: Ferroplasma acidiphilum isolate BR_01 chromosome, complete genome blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma acidiphilum
23310884 23310884 PRJNA1249535_S_NODE_60339_length_445_cov_1.940860_g56970_i0 PRJNA1249535 60339 445 1.94086 8.636827 Methanosarcina sp. MTP4 1434100 Archaea Archaea 54.7 0.012   NTclustered gi|805342629|gb|CP009505.1| 1434100 g56970 i0 96.875 0.0719101123595506 32 1 7 0 156 187 1786294 1786263 Methanosarcina sp. MTP4, complete genome blastn 32 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. MTP4
24582523 24582523 PRJNA1249535_S_NODE_184360_length_315_cov_1.780992_g180977_i0 PRJNA1249535 184360 315 1.780992 5.6101248 Methanosphaera sp. ISO3-F5 1452353 Archaea Archaea 52.8 0.029   NTclustered gi|2695672541|gb|CP118754.2| 1452353 g180977 i0 100 0.0888888888888889 28 0 9 0 119 146 141740 141713 Methanosphaera sp. ISO3-F5 plasmid pNP174, complete sequence blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. ISO3-F5
27376492 27376492 PRJNA1249535_S_NODE_332083_length_232_cov_3.100629_g328700_i0 PRJNA1249535 332083 232 3.100629 7.19345928 Haloferax 2251 Archaea Archaea 42.4 0.0447   NR WP_004970558.1 35745 g328700 i0 33.3 2.68965517241379 69 32 71.1 1 168 4 242 310 WP_004970558.1 L-lactate permease [Haloferax denitrificans] diamond 624 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax denitrificans
28115872 28115872 PRJNA1249535_S_NODE_211005_length_300_cov_4.207048_g207622_i0 PRJNA1249535 211005 300 4.207048 12.621144 Methanobrevibacter boviskoreani 1348249 Archaea Archaea 143 1.43e-38   NR WP_274952164.1 1348249 g207622 i0 71 1 100 29 100 0 1 300 60 159 WP_274952164.1 ATP-binding protein [Methanobrevibacter boviskoreani] diamond 300 143 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter boviskoreani
28778870 28778870 PRJNA1249535_S_NODE_101507_length_373_cov_4.330000_g98124_i0 PRJNA1249535 101507 373 4.33 16.1509 Candidatus Methanolliviera hydrocarbonicum 2491085 Archaea Archaea 45.4 0.0173   NR RZN68674.1 2491085 g98124 i0 29.5 0.764075067024129 95 56 73.2 3 318 46 362 449 RZN68674.1 MAG: acyl-CoA dehydrogenase [Candidatus Methanolliviera hydrocarbonicum] diamond 285 45.4 1 Archaea   Methanobacteriati Methanobacteriota Candidatus Methanoliparia Candidatus Methanoliparales Candidatus Methanollivieraceae Candidatus Methanolliviera Candidatus Methanolliviera hydrocarbonicum
29031841 29031841 PRJNA1249535_S_NODE_152148_length_334_cov_1.984674_g148765_i0 PRJNA1249535 152148 334 1.984674 6.62881116 Thermoplasmatota archaeon 2806419 Archaea Archaea 45.8 0.00914   NR MEE8565855.1 2806419 g148765 i0 50 0.323353293413174 36 17 32.3 1 301 194 1190 1224 MEE8565855.1 hypothetical protein [Thermoplasmatota archaeon] diamond 108 45.8 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
30105247 30105247 PRJNA1249535_S_NODE_290932_length_257_cov_11.391304_g287549_i0 PRJNA1249535 290932 257 11.391304 29.27565128 Halobacteriales archaeon SW_9_67_25 1919210 Archaea Archaea 41.2 0.0251   NR PSQ59589.1 1919210 g287549 i0 30.9 0.642023346303502 55 38 64.2 0 239 75 7 61 PSQ59589.1 MAG: hypothetical protein BRD23_04035 [Halobacteriales archaeon SW_9_67_25] diamond 165 41.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon SW_9_67_25
30231731 30231731 PRJNA1249535_S_NODE_301852_length_252_cov_0.871508_g298469_i0 PRJNA1249535 301852 252 0.871508 2.19620016 Thermoplasmata archaeon 1906666 Archaea Archaea 42.7 0.00741   NR MCK5773661.1 1906666 g298469 i0 35.5 0.738095238095238 62 36 72.6 2 190 8 5 63 MCK5773661.1 50S ribosomal protein L37Ae [Thermoplasmata archaeon] diamond 186 42.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30295297 30295297 PRJNA1249535_S_NODE_229192_length_291_cov_2.119266_g225809_i0 PRJNA1249535 229192 291 2.119266 6.16706406 Thermoplasmata archaeon 1906666 Archaea Archaea 43.1 0.031   NR UCF07645.1 1906666 g225809 i0 53.3 0.309278350515464 30 14 30.9 0 225 136 57 86 UCF07645.1 MAG: GTP-binding protein [Thermoplasmata archaeon] diamond 90 43.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30421634 30421634 PRJNA1249535_S_NODE_168653_length_324_cov_1.322709_g165270_i0 PRJNA1249535 168653 324 1.322709 4.28557716 Methanosphaera sp. 2666342 Archaea Archaea 43.5 0.0466   NR MBQ6220651.1 2666342 g165270 i0 38.6 0.527777777777778 57 34 51.9 1 268 101 259 315 MBQ6220651.1 transposase [Methanosphaera sp.] diamond 171 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
30628608 30628608 PRJNA1249535_S_NODE_281433_length_263_cov_1.942105_g278050_i0 PRJNA1249535 281433 263 1.942105 5.10773615 Methanobacterium 2160 Archaea Archaea 43.9 0.0134   NR MBI4812854.1 2164 g278050 i0 26.2 2.08745247148289 61 44 68.4 1 21 200 81 141 MBI4812854.1 preprotein translocase subunit SecD [Methanobacterium sp.] diamond 549 43.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
32413452 32413452 PRJNA1249535_S_NODE_76179_length_408_cov_2.322388_g72798_i0 PRJNA1249535 76179 408 2.322388 9.47534304 uncultured Methanomethylovorans sp. 183759 Archaea Archaea 45.8 0.0169   NR WP_321416730.1 183759 g72798 i0 36.4 0.485294117647059 66 38 45.6 1 31 216 371 436 WP_321416730.1 RNA-guided endonuclease InsQ/TnpB family protein [uncultured Methanomethylovorans sp.] diamond 198 45.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans uncultured Methanomethylovorans sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;