RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1249535", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1249535 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18206923 18206923 PRJNA1249535_S_NODE_113755_length_361_cov_11.791667_g110372_i0 PRJNA1249535 113755 361 11.791667 42.56791787 Polychytrium aggregatum 110093 Fungi Fungi 67.6 1.22e-6   NTclustered gi|2432164750|ref|XM_053113199.1| 110093 g110372 i0 100 0.199445983379501 36 0 10 0 244 279 77 42 Polychytrium aggregatum amino acid permease-domain-containing protein (BJ171DRAFT_559244), partial mRNA blastn 72 67.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
29757745 29757745 PRJNA1249535_S_NODE_27711_length_589_cov_10.422481_g24497_i0 PRJNA1249535 27711 589 10.422481 61.38841309 Neocallimastix californiae 1754190 Fungi Fungi 46.6 0.0335   NR ORY24744.1 1754190 g24497 i0 34.7 0.366723259762309 72 42 36.7 2 344 129 180 246 ORY24744.1 voltage-gated potassium channel [Neocallimastix californiae] diamond 216 46.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix californiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;