RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1249535", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1249535 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19482523 19482523 PRJNA1249535_S_NODE_205556_length_303_cov_3.765217_g202173_i0 PRJNA1249535 205556 303 3.765217 11.40860751 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|294867727|ref|XM_002765161.1| 423536 g202173 i0 100 0.0924092409240924 28 0 9 0 175 202 168 141 Perkinsus marinus ATCC 50983 hypothetical protein, mRNA blastn 28 52.8 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
27453169 27453169 PRJNA1249535_S_NODE_272003_length_268_cov_2.405128_g268620_i0 PRJNA1249535 272003 268 2.405128 6.44574304 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.0109   NR KAF4655770.1 330153 g268620 i0 42.9 0.705223880597015 63 34 68.3 1 56 238 900 962 KAF4655770.1 hypothetical protein FOL47_009282 [Perkinsus chesapeaki] diamond 189 44.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;