RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1249535", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1249535 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23310108 23310108 PRJNA1249535_S_NODE_320299_length_242_cov_2.532544_g316916_i0 PRJNA1249535 320299 242 2.532544 6.12875648 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 442 1.1099999999999995e-119   NTclustered gi|48727804|gb|AY620294.1| 175275 g316916 i0 99.587 100.272727272727 242 1 100 0 1 242 732 973 Uncultured cercozoan clone 9-4.6 small subunit ribosomal RNA gene, partial sequence blastn 24266 442 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
29694378 29694378 PRJNA1249535_S_NODE_275370_length_266_cov_3.067358_g271987_i0 PRJNA1249535 275370 266 3.067358 8.15917228 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 53.9 5.66e-6   NR MES1909332.1 1215613 g271987 i0 48.9 0.530075187969925 47 24 53 0 143 3 242 288 MES1909332.1 hypothetical protein [Cercozoa sp. M6MM] diamond 141 53.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;