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contig_metadata

13 rows where bioproject = "PRJNA1249535", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 13 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 13 ✖

bioproject 1

  • PRJNA1249535 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9283702 9283702 PRJNA1249535_S_NODE_132688_length_347_cov_2.076642_g129305_i0 PRJNA1249535 132688 347 2.076642 7.20594774 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 544 4.45e-150   NTclustered gi|338182594|gb|JF983102.1| 156588 g129305 i0 96.914 95.2939481268012 324 10 93 0 1 324 198 521 Uncultured Verrucomicrobia bacterium clone Upland_75_2390 16S ribosomal RNA gene, partial sequence blastn 33067 544 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
18207835 18207835 PRJNA1249535_S_NODE_180915_length_317_cov_1.303279_g177532_i0 PRJNA1249535 180915 317 1.303279 4.13139443 Candidatus Methylacidiphilum infernorum 511746 Bacteria Bacteria 56.5 0.002   NTclustered gi|1999105499|gb|CP065956.1| 511746 g177532 i0 94.595 0.116719242902208 37 0 12 2 58 94 617559 617593 Candidatus Methylacidiphilum infernorum strain IT5 chromosome, complete genome blastn 37 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Candidatus Methylacidiphilum infernorum
26883993 26883993 PRJNA1249535_S_NODE_110361_length_365_cov_1.277397_g106978_i0 PRJNA1249535 110361 365 1.277397 4.66249905 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.0392   NR HAS83742.1 2026799 g106978 i0 33.8 0.657534246575342 80 45 59.2 3 59 274 31 110 HAS83742.1 potassium transporter TrkH [Verrucomicrobiota bacterium] diamond 240 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28463521 28463521 PRJNA1249535_S_NODE_312506_length_246_cov_2.705202_g309123_i0 PRJNA1249535 312506 246 2.705202 6.65479692 Opitutaceae bacterium 2006848 Bacteria Bacteria 42.7 0.0375   NR MBL4575456.1 2006848 g309123 i0 31.3 0.817073170731707 67 42 81.7 1 202 2 144 206 MBL4575456.1 sulfatase-like hydrolase/transferase [Opitutaceae bacterium] diamond 201 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29820800 29820800 PRJNA1249535_S_NODE_255291_length_277_cov_2.607843_g251908_i0 PRJNA1249535 255291 277 2.607843 7.22372511 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 43.9 0.00696   NR HEY3915376.1 2499141 g251908 i0 32.9 0.823104693140794 76 49 82.3 1 271 44 32 105 HEY3915376.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 228 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29947420 29947420 PRJNA1249535_S_NODE_271431_length_268_cov_3.758974_g268048_i0 PRJNA1249535 271431 268 3.758974 10.07405032 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.018   NR PYJ11981.1 2026799 g268048 i0 46.2 1.6455223880597 39 20 42.5 1 172 59 23 61 PYJ11981.1 MAG: hypothetical protein DMF06_00965 [Verrucomicrobiota bacterium] diamond 441 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30263627 30263627 PRJNA1249535_S_NODE_313332_length_246_cov_1.312139_g309949_i0 PRJNA1249535 313332 246 1.312139 3.22786194 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 43.1 0.0281   NR MCX8157822.1 2499141 g309949 i0 41.9 0.524390243902439 43 24 51.2 1 34 159 290 332 MCX8157822.1 PQQ-like beta-propeller repeat protein [Verrucomicrobiia bacterium] diamond 129 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31116168 31116168 PRJNA1249535_S_NODE_308655_length_248_cov_2.680000_g305272_i0 PRJNA1249535 308655 248 2.68 6.6464 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 43.9 0.0155   NR HEU0038158.1 2499141 g305272 i0 40.5 0.508064516129032 42 25 50.8 0 218 93 74 115 HEU0038158.1 nitrilase-related carbon-nitrogen hydrolase [Verrucomicrobiia bacterium] diamond 126 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31305937 31305937 PRJNA1249535_S_NODE_144315_length_339_cov_2.342105_g140932_i0 PRJNA1249535 144315 339 2.342105 7.93973595 Puniceicoccales bacterium 2478473 Bacteria Bacteria 45.1 0.0181   NR MDR1498115.1 2478473 g140932 i0 38.5 0.575221238938053 65 31 49.6 2 46 213 989 1053 MDR1498115.1 phosphoribosylformylglycinamidine synthase [Puniceicoccales bacterium] diamond 195 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales     Puniceicoccales bacterium
31369611 31369611 PRJNA1249535_S_NODE_85316_length_393_cov_4.218750_g81934_i0 PRJNA1249535 85316 393 4.21875 16.5796875 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 47.8 0.00331   NR HEU5068864.1 2499141 g81934 i0 37.7 0.465648854961832 61 29 40.5 3 39 197 517 576 HEU5068864.1 MFS transporter [Verrucomicrobiia bacterium] diamond 183 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32128772 32128772 PRJNA1249535_S_NODE_71238_length_417_cov_12.014535_g67857_i0 PRJNA1249535 71238 417 12.014535 50.10061095 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47.8 0.00369   NR MDQ6624598.1 2026799 g67857 i0 39 0.424460431654676 59 34 42.4 1 30 206 102 158 MDQ6624598.1 putative lipid II flippase FtsW [Verrucomicrobiota bacterium] diamond 177 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32602995 32602995 PRJNA1249535_S_NODE_283000_length_262_cov_2.370370_g279617_i0 PRJNA1249535 283000 262 2.37037 6.2103694 Opitutus terrae 107709 Bacteria Bacteria 43.5 0.0248   NR WP_012374175.1 107709 g279617 i0 32.8 0.698473282442748 61 32 65.3 2 209 39 99 154 WP_012374175.1 TonB-dependent siderophore receptor [Opitutus terrae] diamond 183 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
32854758 32854758 PRJNA1249535_S_NODE_233160_length_289_cov_1.657407_g229777_i0 PRJNA1249535 233160 289 1.657407 4.78990623 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 49.3 3.26e-4   NR MDR0993438.1 2026799 g229777 i0 33.8 0.674740484429066 65 43 67.5 0 212 18 430 494 MDR0993438.1 LamG domain-containing protein [Verrucomicrobiota bacterium] diamond 195 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;