RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1249535", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1249535 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2909402 2909402 PRJNA1249535_S_NODE_6523_length_961_cov_14.905405_g489_i1 PRJNA1249535 6523 961 14.905405 143.24094205 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 56.5 0.008   NTclustered gi|2874254045|emb|OY970369.1| 305355 g489 i1 100 0.0915712799167534 30 0 3 0 655 684 1852334 1852363 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 88 56.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
5462572 5462572 PRJNA1249535_S_NODE_965_length_1925_cov_20.231641_g489_i0 PRJNA1249535 965 1925 20.231641 389.45908925 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 56.5 0.015   NTclustered gi|2874254045|emb|OY970369.1| 305355 g489 i0 100 0.0155844155844156 30 0 2 0 278 307 1852363 1852334 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
14385201 14385201 PRJNA1249535_S_NODE_180872_length_317_cov_1.553279_g177489_i0 PRJNA1249535 180872 317 1.553279 4.92389443 Chlamydiales bacterium QZY 2803004 Bacteria Bacteria 418 2.5399999999999995e-112   NTclustered gi|1955632013|gb|MW471098.1| 2803004 g177489 i0 90.596 116.141955835962 319 24 100 4 1 317 171 485 Chlamydiales bacterium QZY 16S ribosomal RNA gene, partial sequence blastn 36817 418 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium QZY
15080111 15080111 PRJNA1249535_S_NODE_68912_length_422_cov_16.120344_g65532_i0 PRJNA1249535 68912 422 16.120344 68.02785168 Chlamydia 810 Bacteria Bacteria 54.7 0.011   NTclustered gi|1032413971|gb|CP015840.1| 1143323 g65532 i0 96.97 0.625592417061611 33 0 8 1 287 318 817081 817113 Chlamydia gallinacea 08-1274/3, complete genome blastn 264 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia gallinacea
30958540 30958540 PRJNA1249535_S_NODE_308054_length_248_cov_4.902857_g304671_i0 PRJNA1249535 308054 248 4.902857 12.15908536 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 41.6 0.0391   NR MFV0340211.1 2052176 g304671 i0 45.9 0.44758064516129 37 20 44.8 0 174 64 53 89 MFV0340211.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 111 41.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;